GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 22:07:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:6891285-6891304
AGCACAGTTGGAATAACGGGAACCATTGGC6891285TATGCGGCTCCAGGTAAACTCTTCTAAAACTTCACAACTTCTCAAATTTC
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:5447022-5447041
AGCACAGTTGGAATAACGGGAACCATTGGC5447022TATGCGGCTCCAGGTAAACTCTTCTAAAACTTCACAACTTCTCAAATTTC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:37684696-37684715
GAAATTTGAGAAGTTGTGAAGTTTTAGAAG37684696AGTTTACCTGGAGCCGCATAGCCAATGGTTCCCGTTATTCCAACTGTGCT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:27103780-27103799
GAAATTTGAGAAGTTGTTAAGTTTTAGAAG27103780AGTTTACCTGGAGCCGCATAGCCAATGGTTCCCGTTATTCCAACTGTGCT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:25317790-25317809
GAAATCTGAGAAGTTGTGAAGTTTTAGAAG25317790AGTTTACCTGGAGCCGCATAGCCAATGGTTCCCGTTATTCCAACTGTGCT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:26943695-26943714
GAAATTTGAGAAGTTGTTAAGTTTTAGAAG26943695AGTTTACCTGGAGCCGCATAGCCAATGGTTCCCGTTATTCCAACTGTGCT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:27167335-27167354
GAAATTTGAGAAGTTGTTAAGTTTTAGAAG27167335AGTTTACCTGGAGCCGCATAGCCAATGGTTCCCGTTATTCCAACTGTGCT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:26465554-26465573
GAAATTTGAGAAGTTGTGAAGTTTTAGAAG26465554AGTTTACCTGGAGCCGCATAGCCAATGGTTCCCGTTATTCCAACTGTGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TATGCGGCTCCAGGTAAACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TATGCGGCTCCAGGTAAACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=TATGCGGCTCCAGGTAAACT&k=0&no_gap=0&offset=0&limit=50
0.118 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTTACCTGGAGCCGCATA&k=0&no_gap=0&offset=0&limit=48
0.123 | 0.004 | cgi_end;

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