GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:29:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH067_03009m, 5' end sequence.
AB450737.1:227-249
AACGTGTTGGCAGTGTCTATTGCCACCGAA227TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
000917AALA004339HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA004339, mRNA sequence.
CN863254.1:63-85
AACGTGTTGGCAGTTTCTATTGCCACCGAA63TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
000817AALB001178HT (AALB) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALB001178, mRNA sequence.
CN865573.1:105-127
AACGTGTTGGCAGTTTCTATTGCCACCGAA105TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010513AAXA001127HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA001127, mRNA sequence.
CN890579.1:243-265
AACGTGTTGGCAGTTTCTATTGCCACCGAA243TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010513AAXA001162HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA001162, mRNA sequence.
CN890602.1:243-265
AACGTGTTGGCAGTTTCTATTGCCACCGAA243TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010530AAXA004250HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA004250, mRNA sequence.
CN891303.1:243-265
AACGTGTTGGCAGTTTCTATTGCCACCGAA243TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010701AAZA003902HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA003902, mRNA sequence.
CN897909.1:387-409
AACGTGTTGGCAGTTTCTATTGCCACCGAA387TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
000605AENA002371HT (AENA) Northern Spy expanding leaf Malus domestica cDNA clone AENA002371, mRNA sequence.
CN925927.1:131-153
AATGTTTTGGCAGTTTCTATTGCCACCGAA131TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
010615AVBC002877HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC002877, mRNA sequence.
CN938375.1:224-246
AACGTGTTGGCAGTTTCTATTGCCACCGAA224TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010616AVBC004353HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004353, mRNA sequence.
CN938935.1:304-326
AACGTGTTGGCAGTTTCTATTGCCACCGAA304TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010616AVBC004355HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004355, mRNA sequence.
CN938936.1:304-326
AACGTGTTGGCAGTTTCTATTGCCACCGAA304TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010616AVBC004814HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004814, mRNA sequence.
CN939133.1:133-155
AACGTGTTGGCAGTTTCTATTGCCACCGAA133TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
020805AVBC012059HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012059, mRNA sequence.
CN947913.1:223-245
AACGTGTTGGCAGTTTCTATTGCCACCGAA223TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
020805AVBC012060HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012060, mRNA sequence.
CN947914.1:223-245
AACGTGTTGGCAGTTTCTATTGCCACCGAA223TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
020731AVBC008558HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC008558, mRNA sequence.
CN949190.1:132-154
AACGTGTTGGCAGTTTCTATTGCCACCGAA132TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
Mdfr3003k20.y1 Mdfr Malus domestica cDNA clone Mdfr3003k20 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CN995855.2:110-132
AATGTTTTGGCAGTTTCTATTGCCACCGAA110TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Mdfrt3036h24.y1 Mdfrt Malus domestica cDNA clone Mdfrt3036h24 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CO419175.1:187-209
AACGTGTTGGCAGTTTCTATTGCCACCGAA187TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
Mdfrt3043g09.y1 Mdfrt Malus domestica cDNA clone Mdfrt3043g09 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CO576117.1:163-185
AATGTTTTGGCAGTTTCTATTGCCACCGAA163TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Mdfr3020j24.y1 Mdfr Malus domestica cDNA clone Mdfr3020j24 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CO754029.1:258-280
AATGTTTTGGCAGTTTCTATTGCCACCGAA258TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Mdfrt3107o07.y1 Mdfrt Malus domestica cDNA clone Mdfrt3107o07 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CV627905.1:227-249
AACGTGTTGGCAGTTTCTATTGCCACCGAA227TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
Mdas9006P07.g1 Apple_EST_Mdas Malus domestica cDNA similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-C gb|
DR996693.1:427-449
AATGTTTTGGCAGTTTCTATTGCCACCGAA427TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Mdfwf2086I22.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-
GO512755.1:406-428
AATGTTTTGGCAGTTTCTATTGCCACCGAA406TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Mdfrb3144D17.g1 Apple_EST_Mdfrb Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-
GO520914.1:204-226
AATGTTTTGGCAGTTTCTATTGCCACCGAA204TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Mdfrg3154H13.g1 Apple_EST_Mdfrg Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-
GO523352.1:450-472
AATGTTTTGGCAGTTTCTATTGCCACCGAA450TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Mdfrg3155C10.g1 Apple_EST_Mdfrg Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-
GO523573.1:339-361
AACGTGTTGGCAGTTTCTATTGCCACCGAA339TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
Mdwdr7514P19.g1 Apple_EST_Mdwdr Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-
GO527585.1:477-499
AACGTGTTGGCAGTTTCTATTGCCACCGAA477TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
Mdfrjg3502B02.g2 Apple_EST_Mdfrjg Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P
GO540100.1:473-495
AACGTGTTGGCAGTTTCTATTGCCACCGAA473TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
Mdfrjg3501N11.g2 Apple_EST_Mdfrjg Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P
GO540520.1:305-327
AATGTTTTGGCAGTTTCTATTGCCACCGAA305TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Pyrus pyrifolia mRNA, clone: NFR1_10_09, 5' end sequence, expressed in fruit.
HX746415.1:226-248
AACGTGTTGGCAGTGTCTATTGCCACCGAA226TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Pyrus pyrifolia mRNA, clone: NLE1_10_16, 5' end sequence, expressed in leaf bud.
HX766542.1:109-131
AACGTGTTGGCAGTTTCTATTGCCACCGAA109TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
TSA: Pyrus pyrifolia mRNA, contig: contig_5295.
FX394975.1:853-875
AACGTGTTGGCAGTGTCTATTGCCACCGAA853TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus pyrifolia mRNA, contig: contig_8704revcomp.
FX411922.1:111-133
AACGTGTTGGCAGTGTCTATTGCCACCGAA111TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc685.
FX609272.1:396-418
AACGTGTTGGCAGTATGTATTGCCACCGAA396TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc3499.
FX612086.1:290-312
AACGTATTGGCAGTTTCTATTGCCACCGAA290TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGATCCAAGCAA
TSA: Pyrus communis mRNA, contig: lc8131.
FX616716.1:336-358
AACGTATTGGCAGTTTCTATTGCCACCGAA336TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
TSA: Pyrus communis mRNA, contig: lc18597.
FX627133.1:167-189
AACGTGTTGGCAGTATGTATTGCCACCGAA167TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc26869.
FX635194.1:227-249
AACGTGTTGGCAGTATGTATTGCCACCGAA227TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc29520.
FX637734.1:32-54
TAGTTAGGACAAGTATGTATTGCCACCGAA32TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTAAGGACCCGAGCAAG
TSA: Pyrus communis mRNA, contig: lc44969.
FX651709.1:211-233
AACGTGTTGGCAGTATGTATTGCCACCGAA211TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCATGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc45183.
FX651892.1:204-226
AACGTATTGGCAGTTTCTATTGCCACCGAA204TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGATCCAAGCAA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:7345223-7345245
AACGTGTTGGCAGTTTCTATTGCCACCGAA7345223TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGTATTGTGCTA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:7409443-7409465
AACGTGTTGGCAGTTTCTATTGCCACCGAA7409443TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGTATTGTGCTA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:6985796-6985818
AATGTTTTGGCAGTTTCTATTGCCACCGAA6985796TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGTACTGTGCTA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:7259183-7259205
AACGTGTTGGCAGTGTCTATTGCCACCGAA7259183TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTCCTCAAGGTATTGTGCTA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:5484937-5484959
AACGTGTTGGCAGTATGTATTGCCACCGAA5484937TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGTACTGTGCTA
Euplexia lucipara genome assembly, chromosome: 15.
OV179157.1:1124920-1124942
ATTTGATCAAAACTAATGCATAAAAAAGCG1124920TATTCCTTCCCACAAGCAGAGAACTGAGCTCGATCCTTACCAACTTTCGATCA
020805AVBC013082HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013082, mRNA sequence.
CN948355.1:328-350
TTGCTCGGGTCCTTGAGGAACTCCTTGACT328TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Mdlv2_4023e18.y1 Mdlv2 Malus domestica cDNA clone Mdlv2_4023e18 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CV655921.1:308-330
TTGCTTGGGTCCTTGAGAAACTCCTTGACC308TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Mdlv4-4047o20.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4047o20 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CX023426.1:332-354
TTGCTTGGGTCCTTGAGAAACTCCTTGACC332TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Mdlv4-4047l19.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4047l19 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CX023492.1:320-342
TTGCTCGGGTCCTTGAGGAACTCCTTGACT320TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
TSA: Pyrus communis mRNA, contig: lc27504.
FX635802.1:70-92
CTTGCTTNATCCTGCTGAAACTCCTTGACC70TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATGAAACTGCCAATACGTTC
TSA: Pyrus x bretschneideri Unigene41076_XinShao mRNA sequence.
JR632726.1:342-364
TTGCTCGGGTCCTTGAGGAACTCCTTGACT342TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGACACTGCCAACACGTT
TSA: Pyrus x bretschneideri Unigene41077_XinShao mRNA sequence.
JR632727.1:512-534
TTGCTTGGGTCCTTGAGAAACTCCTTGACC512TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:37574549-37574571
TAGCACAGTACCTTGAGGAACTCCTTGACT37574549TTCTCTGCTTGTGGGAAGGAATATTCGGTGACAATAGAAACTGCCAAAACATT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:27009314-27009336
TAGCACAGTACCTTGAGGAACTCCTTGACT27009314TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:25224957-25224979
TAGCACAGTACCTTGAGGAACTCCTTGACT25224957TTCTCTGCTTGTGGGAAGGAATATTCGGTGACAATAGAAACTGCCAAAACATT
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:30024449-30024471
TAGCACAATACCTTGAGAAACTCCTTGACC30024449TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:23260487-23260509
TAGCACAGTACCTTGAGGAACTCCTTGACT23260487TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:28891796-28891818
TAGCACAATACCTTGAGAAACTCCTTGACC28891796TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:23256853-23256875
TAGCACAGTACCTTGAGGAACTCCTTGACT23256853TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus domestica genome assembly, chromosome: 7.
OU696683.1:28166974-28166996
TAGCACAATACCTTGAGAAACTCCTTGACC28166974TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:31083769-31083791
TACCACAATACCTTGAGAAACTCCTTAACC31083769TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:24180172-24180194
TAGCACAATACCTTGAGAAACTCCTTGACC24180172TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAATACGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TATTCCTTCCCACAAGCAGAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TATTCCTTCCCACAAGCAGAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.401 | 2.392 | search_plus_done; http://172.18.8.135:50400/match?q=TATTCCTTCCCACAAGCAGAGAA&k=0&no_gap=0&offset=0&limit=50
2.748 | 0.347 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTCTGCTTGTGGGAAGGAATA&k=0&no_gap=0&offset=0&limit=4
2.759 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).