GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:57:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cannabis sativa PK18469.1_1.CasaPuKu mRNA sequence.
JP449841.1:1678-1697
GCGATTTGTTGTATTGTTTACTCATTCCTT1678TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
TSA: Cannabis sativa PK18469.2_1.CasaPuKu mRNA sequence.
JP455004.1:452-471
GCGATTTGTTGTATTGTTTACTCATTCCTT452TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
TSA: Cannabis sativa PK18469.3_1.CasaPuKu mRNA sequence.
JP457425.1:455-474
GCGATTTGTTGTATTGTTTACTCATTCCTT455TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:245656004-245656023
GTGATTTGTTGCTTCATTTACACATTCCTT245656004TATTGCACATACCCGAGAGACCGCGATCGAGCAAGAATGGATGCTTTGGT
Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:245663803-245663822
GTGATTTGTTGTTTCATTTACTCGTTCCTC245663803TATTGCACATACCCGAGAGACCGCGATCGAGCAAGAATGGATGCTTTGGT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp275552_c0_seq1.
LA372674.1:663-682
ACCAAAGCATCCATTCTTGCTCGATCGCGG663TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp275552_c0_seq2.
LA372675.1:349-368
ACCAAAGCATCCATTCTTGCTCGATCGCGG349TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Corylus americana cultivar Rush chromosome 11.
CP125824.1:4419885-4419904
ATTAATGTCTGCATTCTTGCTCTCTCCCTG4419885TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Rush chromosome 11.
CP125824.1:4432471-4432490
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG4432471TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Winkler chromosome 11.
CP125835.1:3919408-3919427
ATTAATGTCTGCATTCTTGCTCTCTCCCTG3919408TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Winkler chromosome 11.
CP125835.1:3932252-3932271
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG3932252TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Khaya senegalensis isolate HCNGB_00002341 chromosome 10.
CP135532.1:227958-227977
ATTAACGGATCCATTCTTGCCCTCTCCCGG227958TCTCTCGGGTATGTGCAATAAAGGAAGGAGTAGATGAAGCAGCAAATGGC
Corylus avellana genome assembly, chromosome: ca11.
LR899433.1:4330363-4330382
ATTAATGTCTGCATTCTTGCTCTCTCCCTG4330363TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus avellana genome assembly, chromosome: ca11.
LR899433.1:4341819-4341838
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG4341819TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TATTGCACATACCCGAGAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TATTGCACATACCCGAGAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.148 | 0.139 | search_plus_done; http://172.18.8.135:50400/match?q=TATTGCACATACCCGAGAGA&k=0&no_gap=0&offset=0&limit=50
0.234 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=TCTCTCGGGTATGTGCAATA&k=0&no_gap=0&offset=0&limit=45
0.240 | 0.006 | cgi_end;

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