GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 20:23:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Nibea albiflora genome assembly, chromosome: 16.
LR699039.1:7543103-7543122
TCGCAAGCGCACTGGCTGGAGTCCGCTGCT7543103TCAAAGCAAAGCCCCTCAATGCTTATAGAGAATACAATAACACACACACA
Zeus faber genome assembly, chromosome: 12.
OY482856.1:23808622-23808641
GGCAGCACTCTCAGATGCACCAGCACAAGA23808622TCAAAGCAAAGCCCCTCAATCTTCTCCCCTCGCTGAGCCGCTCCGACCGG
JP 2022127485-A/23: Method for identification of tea cultivars.
PA554032.1:1-20
1TCAAAGCAAAGCCCCTCAAT
Camellia sinensis mRNA, clone: RT24F10, unspecified EST, sequenced using T7 primer, expressed in roots.
FS949886.1:148-167
CTACCATTTAACAATTGCTTAAATCACAAT148TCAAAGCAAAGCCCCTCAATTAAAAGGGCAACAAAACAAAACAAAACAAC
Camellia sinensis mRNA, clone: RT8G01, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS952042.1:69-88
CTACCATTTAACAATTGCTTAAATCACAAT69TCAAAGCAAAGCCCCTCAATTAAGAGGGCAACAAAACAAAACAAAACAAC
ESTFullTSD1_68 ESTFullTSD1 Camellia sinensis var. assamica cDNA clone A187 5', mRNA sequence.
GH709622.1:133-152
TTTTTTACTAACAACTGCTTAAATCACAAT133TCAAAGCAAAGCCCCTCAATTAAGAGGGCAACAAAACAAAACAAAACAAA
TSA: Camellia sinensis tea_rep_c612 mRNA sequence.
KA280055.1:56-75
CTACCATTTAACAACTGCTTAAATCACAAT56TCAAAGCAAAGCCCCTCAATTAAGAGGGCAACAAAACAAAACAAAACAAC
TSA: Camellia sinensis tea_rep_c2201 mRNA sequence.
KA281636.1:103-122
CTACCATTTAACAACTGCTTAAATCACAAT103TCAAAGCAAAGCCCCTCAATTAAGAGGGCAACAAAACAAAACAAAACAAC
JP 2022127485-A/4: Method for identification of tea cultivars.
PA554013.1:177-196
TTTGTTTTGTTTTGTTTTGNTGCCCTCTTA177ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAGTTGTTAAATGGTAG
Camellia sinensis mRNA, clone: LR22F04, 5' end sequence, expressed in lateral roots.
FS945006.1:70-89
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA70ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG
Camellia sinensis mRNA, clone: LR28B05, 5' end sequence, expressed in lateral roots.
FS945434.1:298-317
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA298ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG
Camellia sinensis mRNA, clone: RT24F10, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS949885.1:284-303
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA284ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG
Camellia sinensis mRNA, clone: RT31E04, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS950996.1:69-88
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA69ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG
Camellia sinensis mRNA, clone: SS07F03, 5' end sequence, expressed in shoot stems.
FS952676.1:740-759
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA740ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCA
Camellia sinensis mRNA, clone: SS27C12, 5' end sequence, expressed in shoot stems.
FS954106.1:151-170
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA151ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG
Camellia sinensis mRNA, clone: TB23F08, 5' end sequence, expressed in terminal buds.
FS956073.1:674-693
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA674ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG
Camellia sinensis mRNA, clone: TR03B06, 5' end sequence, expressed in tap roots.
FS956731.1:82-101
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA82ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG
EST1994 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_20_75.M13+_C10.ab1, mRNA sequence.
GE651667.1:592-611
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA592ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG
SDSS2_7 SDSS2 Camellia sinensis var. sinensis cDNA clone P7 5', mRNA sequence.
GH710836.1:177-196
TTTGTTTTGTTTTGTTTTGNTGCCCTCTTA177ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAGTTGTTAAATGGTAG
Tea005_2005-10-27_1/Tea005_C09_038_1 Camellia sinensis (tea) cultivar DT1 EST library Camellia sinensis cDNA, mRNA sequence.
JK478601.1:131-150
TTTGTTTTGTTTTGTTTTGNTGCCCTCTTA131ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAGTTGTTAAATGGTAG
Camellia sinensis sucrose synthase 1 mRNA, complete cds.
KF921302.1:2821-2840
GTTGTTTTGTTTTGTTTTGTTGCCCTCTTA2821ATTGAGGGGCTTTGCTTTGAATTGTGATTTAAGCAATTGTTAAATGGTAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAAAGCAAAGCCCCTCAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAAAGCAAAGCCCCTCAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.563 | 0.554 | search_plus_done; http://172.18.8.135:50400/match?q=TCAAAGCAAAGCCCCTCAAT&k=0&no_gap=0&offset=0&limit=50
1.825 | 1.262 | search_minus_done; http://172.18.8.135:50400/match?q=ATTGAGGGGCTTTGCTTTGA&k=0&no_gap=0&offset=0&limit=42
1.834 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).