GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:47:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES05N08, 5' end sequence.
FY384301.1:281-302
GATTGATTGATTGATTGATTGAAGTTCTCA281TCAAATGGAACCTTCAAGAACAATAACAAATCCAGAAGCAAGCACATCATCA
Dianthus caryophyllus mRNA, clone: CES29C09, 5' end sequence.
FY393087.1:246-267
GATTGATTGATTGATTGATTGAAGTTCTCA246TCAAATGGAACCTTCAAGAACAATAACAAATCCAGAAGCAAGCACATCATCA
Dianthus caryophyllus mRNA, clone: CFES08K13, 5' end sequence.
FY397064.1:257-278
GATTGATTGATTGATTGATTGAAGTTCTCA257TCAAATGGAACCTTCAAGAACAATAACAAATCCAGAAGCAAGCACATCATCA
Dianthus caryophyllus mRNA, clone: CFES12K14, 5' end sequence.
FY398575.1:199-220
GATTGATTGATTGATTGATTGAAGTTCTCA199TCAAATGGAACCTTCAAGAACAATAACAAATCCAGGAGCAAGCACATCATCA
Dianthus caryophyllus mRNA, clone: CFES25_F20, 5' end sequence.
FY403328.1:284-305
GATTGATTGATTGATTGATTGAAGTTCTCA284TCAAATGGAACCTTCAAGAACAATAACAAATCCAGAAGCAAGCACATCATCA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.376.C1.
FX297236.1:280-301
GATTGATTGATTGATTGATTGAAGTTCTCA280TCAAATGGAACCTTCAAGAACAATAACAAATCCAGAAGCAAGCACATCATCA
Musa troglodytarum cultivar karat chromosome 8.
CP097510.1:42186780-42186801
TATACTATAGTTTATTACATATTATATGAT42186780TCAAATGGAACCTTCAAGAACACTGAAGTTTTCTTGAACTCTTTATTTATGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCAAATGGAACCTTCAAGAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAAATGGAACCTTCAAGAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.734 | 0.726 | search_plus_done; http://172.18.8.135:50400/match?q=TCAAATGGAACCTTCAAGAACA&k=0&no_gap=0&offset=0&limit=50
0.750 | 0.016 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTCTTGAAGGTTCCATTTGA&k=0&no_gap=0&offset=0&limit=43
0.750 | 0.000 | cgi_end;

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