GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 01:47:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2004016024-A/5: A primer for detecting DNA of the Brassica oleracea var. capitata.
BD410871.1:1-24
1TCAACGAGTTGTCTCTTAGGTCGG
JP 2004016024-A/9: A primer for detecting DNA of the Brassica oleracea var. capitata.
BD410875.1:23-46
GGTCCCTGACGATAAAATGAAA23TCAACGAGTTGTCTCTTAGGTCGGATAACCCCACGAAACATTCATAAAAGGGCA
oeh36e12.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH991410.1:646-669
GGATGAACTGTCCCTGACGATAAAATGAAA646TCAACGAGTTGTCTCTTAGGTCGGATAACCCCCCAAACATTCATAAAATA
Brassica oleracea var. capitata DNA, STS, OPA06-1500.
AB088220.1:23-46
GGTCCCTGACGATAAAATGAAA23TCAACGAGTTGTCTCTTAGGTCGGATAACCCCACGAAACATTCATAAAAGGGCA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:39754833-39754856
GGATGAACTGTCCCTGACGATAAAATGAAA39754833TCAACGAGTTGTCTCTTAGGTCGGATAACCCCACGAAACATTAGTAAAAGGGCA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:34480375-34480398
GGATGAACTGTCCCTGACGATAAAATGAAA34480375TCAACGAGTTGTCTCTTAGGTCGGATAACCCCACGAAACATTAGTAAAAGGGCA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:33581027-33581050
GGATGAACTGTCCCTGACGATAAAATGAAA33581027TCAACGAGTTGTCTCTTAGGTCGGATAACCCCACGAAACATTCATAAAAGGGCA
BOGBV78TR BOGB Brassica oleracea genomic clone BOGBV78, genomic survey sequence.
BH425787.1:433-456
AGCAATTTTATGAATGTTTGGTGGGGTTAT433CCGACCTAAGAGACAACTCGTTGATTTCATTTTATCGTCAGGGACAGTTCATCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCAACGAGTTGTCTCTTAGGTCGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAACGAGTTGTCTCTTAGGTCGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=TCAACGAGTTGTCTCTTAGGTCGG&k=0&no_gap=0&offset=0&limit=50
0.147 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=CCGACCTAAGAGACAACTCGTTGA&k=0&no_gap=0&offset=0&limit=43
0.148 | 0.001 | cgi_end;

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