GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:54:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063A04, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232510.1:92658-92677
TTCTTGGTTTGACAAGAATGTTAGATGGAT92658TCAACTCTCCGTGGTACACTCCCTTGGAGTGAAGATATTCCATACCACGT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69298938-69298957
TTCTTGGTTTGACAAGAATGTTAGATGGAT69298938TCAACTCTCCGTGGTACACTCCCTTGGAGTGAAGATATTCCATACCACGT
Brassica rapa genome, scaffold: A09.
LR031568.1:57391887-57391906
TTCTTGGTTTGACAAGAATGTTAGATGGAT57391887TCAACTCTCCGTGGTACACTCCCTTGGAGTGAAGATATTCCATACCACGT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:19562294-19562313
TTCTTGGTTTGACAAGAATGTTAGATGGAT19562294TCAACTCTCCGTGGTACACTCTCTTGGAGTGAAGATATTCCATGCCACGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189365.2:58693-58712
ACGTGGTATGGAATATCTTCACTCCAAGGG58693AGTGTACCACGGAGAGTTGAATCCATCTAACATTCTTGTCAAACCAAGAA
Raphanus sativus cultivar WK10039 clone RsH014F17, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.
AC255135.1:151028-151047
TCGTGGCATGGAATATCTTCACTCCAAGAG151028AGTGTACCACGGAGAGTTGAATCCATCTAACATTCTTGTCAAACCAAGAA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:24470656-24470675
TCGTGGCATGGAATATCTTCACTCCAAGAG24470656AGTGTACCACGGAGAGTTGAATCCATCTAACATTCTTGTCAAACCAAGAA
Steromphala cineraria genome assembly, chromosome: 3.
OU744722.1:3193838-3193857
TAAGCTAATTCCGCAGGATTACCCTCCAAT3193838AGTGTACCACGGAGAGTTGAGTTAAAGCGATACGCAAAGCAGTTTTCAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCAACTCTCCGTGGTACACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAACTCTCCGTGGTACACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=TCAACTCTCCGTGGTACACT&k=0&no_gap=0&offset=0&limit=50
0.153 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=AGTGTACCACGGAGAGTTGA&k=0&no_gap=0&offset=0&limit=46
0.155 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).