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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:02:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GA__Ed0042D12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0042D12f, mRNA sequence.
BQ411750.1:96-115
GAACCTTGATCTTCTCAAGAAGATTGCCTC96TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
GR__Ea01N04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea01N04 5', mRNA sequence.
CO084950.1:151-170
GAACCTTGATCTTCTCAAGAAGATTGCCTC151TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
CM073D02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR459157.1:151-170
GAACCTTGATCTTCTCAAGAAGATTGCCTC151TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
EST001840 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 08-B20 5', mRNA sequence.
GR708640.1:30-49
AACCTTGATCTTCTCAAGAAGATTGCCTC30TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
H09-G09301031-4-38-9 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone H09-G09301031-4-38-9, mRNA sequence.
JG841236.1:161-180
GAACCTTGATCTTCTCAAGAAGATTGCCTC161TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
ndcxe0_0012_H10.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ380586.1:161-180
GAACCTTGATCTTCTCAAGAAGATTGCCTC161TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
ndcxf0_0010_H07.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ383346.1:162-181
GAACCTTGATCTTCTCAAGAAGATTGCCTC162TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
Gossypioides kirkii chromosome KI_13.
CP032255.1:38129449-38129468
CTTTTTGATGTTTCGAGTAGAGATTGCCTC38129449TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGAAGATATTAAGG
Gossypium raimondii isolate D5-4 chromosome D5_13.
CP032565.1:52261929-52261948
CTTTTGGATGTTTCGAGTAGAGATTGCCTC52261929TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
Gossypium turneri isolate D10-2 chromosome D10_13.
CP032583.1:54215054-54215073
CTTTTTGATGTTTCGAGTAGAGATTGCCTC54215054TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
Gossypium herbaceum isolate GPA1alz chromosome 13.
CP106700.1:115311081-115311100
CTTTTTGATGTTTCGAGTAGAGATTGCCTC115311081TCAACTTGATGAGGGGAAGGGACTGGCTAAAACGGTGGCAGATATTAAGG
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737545.1:55616208-55616227
CCTTGCTAGCAACATCTATTGCTACTTGTA55616208TCAACTTGATGAGGGGAAGGGCACATGACCAAAGCCCAACATCTAAAGGG
rayctn0_0035_A12.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO091863.1:128-147
CCTTAATATCTGCCACCGTTTTAGCCAGTC128CCTTCCCCTCATCAAGTTGAGAGGCAATCTCTACTTGAAACATCAAAAAG
Gossypium herbaceum isolate Zhongcao1 chromosome 13.
CP106688.1:8358215-8358234
CCTTAATATCTGCCACCGTTTTAGCCAGTC8358215CCTTCCCCTCATCAAGTTGAGAGGCAATCTCTACTCGAAACATCAAAAAG
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:9647012-9647031
CCTTAATATCTGCCACCGTTTTAGCCAGTC9647012CCTTCCCCTCATCAAGTTGAGAGGCAATCTCTACTCGAAACATTAAAAAG
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:9493455-9493474
CCTTAATATCTGCCACCGTTTTAGCCAGTC9493455CCTTCCCCTCATCAAGTTGAGAGGCAATCTCTACTCAAAACATTAAAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAACTTGATGAGGGGAAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAACTTGATGAGGGGAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.830 | 0.821 | search_plus_done; http://172.18.8.135:50400/match?q=TCAACTTGATGAGGGGAAGG&k=0&no_gap=0&offset=0&limit=50
1.009 | 0.179 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTCCCCTCATCAAGTTGA&k=0&no_gap=0&offset=0&limit=38
1.014 | 0.005 | cgi_end;

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