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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:50:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

MAG: Candidatus Diapherotrites archaeon isolate Fred_18-Q3-R57-64_BAT3C.431 chromosome, complete genome.
CP064981.1:639884-639903
GAGAAGTCTACGAGCAAGAGATCAAGGAGA639884TCAAGCAGAACGAAGATGGAACGATCCAAATCACTACCGCCGATGGAAAG
Solanum melongena mRNA, clone: CAL05K04, 3'end, expressed in callus at 3d after subculture.
FS010613.1:109-128
TAACGAAATTACACTTGACCAACCACCTAA109TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAACAAAAAA
Solanum melongena mRNA, clone: CHX02K10, 3'end, expressed in ovary at 24h after anthesis.
FS012442.1:94-113
TAACGAAATTACACTTGACCAACCACCTAA94TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: MLF01D12, 3'end, expressed in leaf at fully expanded leaf.
FS022707.1:93-112
TAACGAAATTACACTTGACCAACCACCTAA93TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: MLF02D11, 3'end, expressed in leaf at fully expanded leaf.
FS023361.1:94-113
TAACGAAATTACACTTGACCAACCACCTAA94TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: RBW06K20, 3'end, expressed in root at 3w after germination.
FS052414.1:68-87
TAACGAAATTACACTTGACCAACCACCTAA68TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: ROL01K03, 3'end, expressed in root at 3w after germination.
FS053417.1:95-114
TAACGAAATTACACTTGACCAACCACCTAA95TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: SmFL03K10, 3'end.
FS068692.1:111-130
TAACGAAATTACACTTGACCAACCACCTAA111TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: SmFL07H21, 3'end.
FS071120.1:94-113
TAACGAAATTACACTTGACCAACCACCTAA94TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: SmFL11D13, 3'end.
FS073659.1:94-113
TAACGAAATTACACTTGACCAACCACCTAA94TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: SmFL12D23, 3'end.
FS074394.1:94-113
TAACGAAATTACACTTGACCAACCACCTAA94TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Solanum melongena mRNA, clone: SmFL31O17, 3'end.
FS087971.1:94-113
TAACGAAATTACACTTGACCAACCACCTAA94TCAAGCAGAACGAAGATGGAAGGTATCTTGAAGAACAAAAAAAAAAAAAA
Strigamia acuminata genome assembly, chromosome: Y.
OX442322.1:7082447-7082466
AGCTAGTGGGATGCAAGTGGATTTACACCG7082447TCAAGCAGAACGAAGATGGACAAATTGCTTGATACAAAGCGAGACTTGTG
Strigamia acuminata genome assembly, chromosome: X.
OX442324.1:224796-224815
AGCTAGTGGGATGCAAGTGGATTTACACCG224796TCAAGCAGAACGAAGATGGACAAATTGCACGATACAAAGCGAGACTTGTG
Strigamia acuminata genome assembly, chromosome: X.
OX442324.1:7443230-7443249
AGCTAGTGGGATGCAAGTGGATTTACACCG7443230TCAAGCAGAACGAAGATGGACAAATTGCACGATACAAAGCGAGACTTGTG
Plagodis pulveraria genome assembly, chromosome: 15.
OY982964.1:12626296-12626315
GACGTTTCAGAGTGACAGCCCAATGCAAAC12626296TCAAGCAGAACGAAGATGGACCAAGGATGGACAAACTTACGCTTACTTAT
Solanum melongena mRNA, clone: AE007D10, 5'end, expressed in ovary at anthesis.
FS003589.1:262-281
TTTTTTTTTTTTTTGTTCTTCAAGATACCT262TCCATCTTCGTTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTA
Stenoptilia bipunctidactyla genome assembly, chromosome: 1.
OX101722.1:21761222-21761241
ATTTTGTTTAGCTTTAGTCATGATGAAGGT21761222TCCATCTTCGTTCTGCTTGATCTTTGCAGAACAGTTCGAGGACCGGGCAG
Stenoptilia bipunctidactyla genome assembly, chromosome: 1.
OX101722.1:21869670-21869689
ATTATGGTAAGCTTTAGTCATGATGAAGGT21869670TCCATCTTCGTTCTGCTTGATCTTCGAAGGAAATTTCGAGGACCGGGCAG
Stenoptilia bipunctidactyla genome assembly, chromosome: 1.
OX101722.1:23462809-23462828
ATTATGGTAAGCTTTAGTCATGATGAAGGT23462809TCCATCTTCGTTCTGCTTGATCTTCGAAGGAAATTTCTAGGACCGGGCAG
Stenoptilia bipunctidactyla genome assembly, chromosome: 1.
OX101722.1:24990630-24990649
ATTATGGTAAGCTTTAGTCATGATGAAGGT24990630TCCATCTTCGTTCTGCTTGATCTTCGAAGGAAATTTCGAGGACCGGGCAG
Strigamia acuminata genome assembly, chromosome: Y.
OX442322.1:879649-879668
CACAAGTCTCGCTTTGTATCGTGCAATTTG879649TCCATCTTCGTTCTGCTTGACGGTGTAAATCCACTTGCATCCCACTAGCT
Strigamia acuminata genome assembly, chromosome: X.
OX442324.1:7488922-7488941
CACAAGTCTCGCTTTGTATCGTGCAATTTG7488922TCCATCTTCGTTCTGCTTGACGGTGTAAATCCACTTGCAACCCACCAGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAAGCAGAACGAAGATGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAAGCAGAACGAAGATGGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.989 | 0.980 | search_plus_done; http://172.18.8.135:50400/match?q=TCAAGCAGAACGAAGATGGA&k=0&no_gap=0&offset=0&limit=50
1.143 | 0.155 | search_minus_done; http://172.18.8.135:50400/match?q=TCCATCTTCGTTCTGCTTGA&k=0&no_gap=0&offset=0&limit=34
1.148 | 0.005 | cgi_end;

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