GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 13:05:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig12960, mRNA sequence.
JW063204.1:165-185
CCAATTTATTTGCTATGGGTAGCAATTTTC165TCAAGGCAATCACTACCAACCCCATGTATCCAATTATCAAATTCCTTAAAC
comvsuca1005_a08 SSH library of flowers of Capsicum - Arabidopsis Capsicum annuum cDNA 5', mRNA sequence.
EL813938.1:188-208
GTTTAAGGAATTTGATAATTGGATACATGG188GGTTGGTAGTGATTGCCTTGAGAAAATTGCTACCCATAGCAAATAAATTGG
KS19061B08 KS19 Capsicum annuum cDNA, mRNA sequence.
GD092916.1:434-454
GTTTAAGGAATTTGATAATTGGATACATGG434GGTTGGTAGTGATTGCCTTGAGAAAATTGCTACCCATAGCAAATAAATTGG
KS20022B11 KS20 Capsicum annuum cDNA, mRNA sequence.
GD095324.1:357-377
GTTTAAGGAATTTGATAATTGGATACATGG357GGTTGGTAGTGATTGCCTTGAGAAAATTGCTACCCATAGCAAATAAATTGG
KS20033D09 KS20 Capsicum annuum cDNA, mRNA sequence.
GD096366.1:548-568
GTTTAAGGAATTTGATAATTGGATACATGG548GGTTGGTAGTGATTGCCTTGAGAAAATTGCTACCCATAGCAAATAAATTGG
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:233081094-233081114
GTTTAAGGAATTTGATAATTGGATACATGG233081094GGTTGGTAGTGATTGCCTTGAGAAAATTGCTACCCATAGCAAATAAATTGG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:237657507-237657527
GTTTAAGGAATTTGATAATTGGATACATGG237657507GGTTGGTAGTGATTGCCTTGAGAAAATTGCTACCCATAGCAAATAAATTGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCAAGGCAATCACTACCAACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAAGGCAATCACTACCAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=TCAAGGCAATCACTACCAACC&k=0&no_gap=0&offset=0&limit=50
0.363 | 0.253 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTGGTAGTGATTGCCTTGA&k=0&no_gap=0&offset=0&limit=49
0.368 | 0.004 | cgi_end;

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