GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:10:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:27957267-27957288
TAAGTGTCAGAACTTTTAAGTGCATGAATA27957267TCACAGAGAATCACAAGGTGGATATTCAACTTAAAAAGTATGAAAAGAGAAT
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:24419896-24419917
TAAGTGTCAGAACTTTTAAGTGCATGAATG24419896TCACAGAGAATCACAAGGTGGATATTCAACTTAGAAAGTGTGGAAAGAGAAT
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:26431354-26431375
TAAGTGTCAGAACTTTTAAGTGCATGAATA26431354TCACAGAGAATCACAAGGTGGATATTCAACTTAAAAAGTATGAAAAGAGAAT
Malus domestica genome assembly, chromosome: 14.
OU696690.1:27761133-27761154
TAGGTGTCAGAACTTTTAAGTGCATGAATA27761133TCACAGAGAATCACAAGGTGGATATTCAACTTAGAAAGTGTGAAAAGAGAAT
Malus domestica genome assembly, chromosome: 14.
OU744555.1:28486318-28486339
TAGGTGTCAGAACTTTTAAGTGCATGAATA28486318TCACAGAGAATCACAAGGTGGATATTCAACTTAGAAAGTGTGAAAAGAGAAT
Malus domestica genome assembly, chromosome: 14.
OU744966.1:28516592-28516613
TAAGTGTCAGAACTTTTAAGTGCATGAATA28516592TCACAGAGAATCACAAGGTGGATATTCAACTTAAAAAGTATGAAAAGAGAAT
Malus domestica genome assembly, chromosome: 14.
OU745004.1:28395846-28395867
TAAGTGTCAGAACTTTTAAGTGCATGAATA28395846TCACAGAGAATCACAAGGTGGATATTCAACTTAAAAAGTATGAAAAGAGAAT
Polytrichum commune genome assembly, chromosome: 6.
OX485808.1:32881577-32881598
CAACAAGCAACACATCACATGATGTTAATG32881577TCACAGAGAATCACAAGGTGGAATCACAATGTTTGTGATGTGTTGGGCCCAG
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:22895551-22895572
TAAGTGTCAGAACTTCTAAGTGCATGAATG22895551TCACAGAGAATCACAAGGTGGATATTCAACTTAGAAAGTGTGGAAAGAGAAT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:3849239-3849260
ATTCTCTTTTCACACTTTCTAAGTTGAATA3849239TCCACCTTGTGATTCTCTGTGATATTCATGCACTTAAAAGTTCTGACACCTA
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:3923109-3923130
ATTCTCTTTTCATACTTTTTAAGTTGAATA3923109TCCACCTTGTGATTCTCTGTGATATTCATGCACTTAAAAGTTCTGACACTTA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:3820579-3820600
ATTCTCTTTTCACACTTTCTGAGTTGAATA3820579TCCACCTTGTGATTCTCTGTGATATTCATGCACTTAAAAGTTCTGACACTTA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:3882384-3882405
ATTCTCTTTTCACACTTTCTAAGTTGAATA3882384TCCACCTTGTGATTCTCTGTGATATTCATGCACTTAAAAGTTCTGACACCTA
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:3828926-3828947
ATTCTCTTTTCATACTTTTTAAGTTGAATA3828926TCCACCTTGTGATTCTCTGTGATATTCATGCACTTAAAAGTTCTGACACTTA
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:4082325-4082346
ATTCTGTTTCCACACTTTCTAAGTTGAATA4082325TCCACCTTGTGATTCTCTGTGACATTCATGCACTTAAAAGTTCTGACACTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCACAGAGAATCACAAGGTGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACAGAGAATCACAAGGTGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.184 | 0.175 | search_plus_done; http://172.18.8.135:50400/match?q=TCACAGAGAATCACAAGGTGGA&k=0&no_gap=0&offset=0&limit=50
0.283 | 0.099 | search_minus_done; http://172.18.8.135:50400/match?q=TCCACCTTGTGATTCTCTGTGA&k=0&no_gap=0&offset=0&limit=41
0.287 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).