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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR2GM26TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD972126.1:259-278
AGATTCTGCGATTCTGAAAGCTGTTGGGTT259TCACAGGAAAGCACTTGCACCTCGTAGCCCAGTATCATACGATAAGTTGC
Raphanus sativus mRNA, clone: RSCS15L16, 5' end sequence.
FY451335.1:287-306
AGATTCTGCGATTCTGAAAGCTGTTGGGTT287TCACAGGAAAGCACTTGCACCTCGTAGCCCAGTATCATACGACAAGTTGC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:9555551-9555570
TTTTACTTTCTGTAGGAAAGCTGTTGGGTT9555551TCACAGGAAAGCACTTGCACCTCGTAGCCCAGTATCATACGACAAGTTGC
RR1AN08TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV526440.1:265-284
GCAACTTGTCGTATGATACTGGGCTACGAG265GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCCTACAGAAAGTAAAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8904.
FX658028.1:1481-1500
GCAACTTGTCGTATGATACTGGGCTACGAG1481GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCAGAATCGCAGAATCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_14981.
FX791752.1:1480-1499
GCAACTTGTCGTATGATACTGGGCTACGAG1480GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCAGAATCGCAGAATCT
TSA: Raphanus sativus RS15794 mRNA sequence.
JT800341.1:1512-1531
GCAACTTGTCGTATGATACTGGGCTACGAG1512GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCAGAATCGCAGAATCT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:44094950-44094969
GCAACTTGTCGTATGATACTGGGCTACGAG44094950GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCCTACAGAAAGTAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCACAGGAAAGCACTTGCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACAGGAAAGCACTTGCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.472 | 0.464 | search_plus_done; http://172.18.8.135:50400/match?q=TCACAGGAAAGCACTTGCAC&k=0&no_gap=0&offset=0&limit=50
0.731 | 0.259 | search_minus_done; http://172.18.8.135:50400/match?q=GTGCAAGTGCTTTCCTGTGA&k=0&no_gap=0&offset=0&limit=47
0.735 | 0.004 | cgi_end;

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