GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-05 12:12:41, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR2GM26TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD972126.1:259-278
AGATTCTGCGATTCTGAAAGCTGTTGGGTT259TCACAGGAAAGCACTTGCACCTCGTAGCCCAGTATCATACGATAAGTTGC
Raphanus sativus mRNA, clone: RSCS15L16, 5' end sequence.
FY451335.1:287-306
AGATTCTGCGATTCTGAAAGCTGTTGGGTT287TCACAGGAAAGCACTTGCACCTCGTAGCCCAGTATCATACGACAAGTTGC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:9555551-9555570
TTTTACTTTCTGTAGGAAAGCTGTTGGGTT9555551TCACAGGAAAGCACTTGCACCTCGTAGCCCAGTATCATACGACAAGTTGC
Millepora complanata genome assembly, chromosome: 3.
OZ210620.1:103217848-103217867
AAAAAGAAGTTCTGAGAAATTTCGCAAAAT103217848TCACAGGAAAGCACTTGCACTAGATGCTCTTTCTTAAGCTTAATATTTTT
Millepora complanata genome assembly, chromosome: 12.
OZ210629.1:51329724-51329743
AATAGGTGTTCTTAAAACGTTTCGCACACT51329724TCACAGGAAAGCACTTGCACTGGAGTCTCTTTTTAAAAAACTTGCAGGTT
Millepora dichotoma genome assembly, chromosome: 7.
OZ218608.1:142671488-142671507
AAAAAGGTGTTCTTAGAAATTTCGCAAAAT142671488TCACAGGAAAGCACTTGCACCAGAGTCTGCAGGCCTGCAAGTTTATTTTA
Millepora dichotoma genome assembly, chromosome: 13.
OZ218614.1:117437657-117437676
AAAAGGTGTCTTTCAAAAATATCTCAAAAT117437657TCACAGGAAAGCACTTGCACCAGAGTTTCTTTTTTTAAGTAAAGTTGCAG
Millepora alcicornis genome assembly, chromosome: 3.
OZ218836.1:108283832-108283851
AAAAAGAAGTTCTGAGAAATTTCGCAAAAT108283832TCACAGGAAAGCACTTGCACTAGATGCTCTTTCTTAAGCTTAATATTTTT
Millepora alcicornis genome assembly, chromosome: 15.
OZ218848.1:6467814-6467833
AAGTAGGAGTTCTTAAAAATTCAAAAAAAT6467814TCACAGGAAAGCACTTGCACCGGAGTATCTTTTTTGATAAAGTTGTGCAA
Stilbops ruficornis genome assembly, chromosome: 2.
OZ223744.1:3226260-3226279
AGAGAAATGGCAAAAGCAACCGGATATAAG3226260TCACAGGAAAGCACTTGCACGACGACCAGACCGATTTCGAGAGGTCGACT
Lissotriton helveticus genome assembly, chromosome: 6.
OZ180052.1:1146487050-1146487069
GCTAGGGGTATCGGAGCAGTAGCTGCACAA1146487050TCACAGGAAAGCACTTGCACTTTTCACCGTCTATTAGTTCAAACATGCAC
RR1AN08TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV526440.1:265-284
GCAACTTGTCGTATGATACTGGGCTACGAG265GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCCTACAGAAAGTAAAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8904.
FX658028.1:1481-1500
GCAACTTGTCGTATGATACTGGGCTACGAG1481GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCAGAATCGCAGAATCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_14981.
FX791752.1:1480-1499
GCAACTTGTCGTATGATACTGGGCTACGAG1480GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCAGAATCGCAGAATCT
TSA: Raphanus sativus RS15794 mRNA sequence.
JT800341.1:1512-1531
GCAACTTGTCGTATGATACTGGGCTACGAG1512GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCAGAATCGCAGAATCT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:44094950-44094969
GCAACTTGTCGTATGATACTGGGCTACGAG44094950GTGCAAGTGCTTTCCTGTGAAACCCAACAGCTTTCCTACAGAAAGTAAAA
Millepora complanata genome assembly, chromosome: 6.
OZ210623.1:104687138-104687157
AACTTGGTGTTTTCGTTAAAAAGGTCGTCG104687138GTGCAAGTGCTTTCCTGTGAATTTCGCGAAAATTTCCAATTTTTTACAGA
Millepora complanata genome assembly, chromosome: 15.
OZ210632.1:137040096-137040115
TTGCACAACTTTATCAAAAAAGATACTCCG137040096GTGCAAGTGCTTTCCTGTGAATTTTTTTGAATTTTTAAGAACTCCTACTT
Millepora dichotoma genome assembly, chromosome: 2.
OZ218603.1:111691389-111691408
GAGTCTCAATTTTATTAAAAAGAGACTCTG111691389GTGCAAGTGCTTTCCTGTGAATTTTGCAAAAATTTTAAGGTCACTTTTTT
Millepora dichotoma genome assembly, chromosome: 13.
OZ218614.1:7801342-7801361
AGCCTACAAGTTTTTTAAAAATAGACTCTA7801342GTGCAAGTGCTTTCCTGTGAAGATTGCAAAACTTCTAAGAACACATATTT
Millepora alcicornis genome assembly, chromosome: 6.
OZ218839.1:106294215-106294234
AACTTGGTGTTTTCGTTAAAAAGGTCGTCG106294215GTGCAAGTGCTTTCCTGTGAATTTCGCGAAAATTTCCAATTTTTTACAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCACAGGAAAGCACTTGCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACAGGAAAGCACTTGCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.398 | 0.389 | search_plus_done; http://172.18.8.135:50900/match?q=TCACAGGAAAGCACTTGCAC&k=0&no_gap=0&offset=0&limit=50
0.663 | 0.265 | search_minus_done; http://172.18.8.135:50900/match?q=GTGCAAGTGCTTTCCTGTGA&k=0&no_gap=0&offset=0&limit=39
0.670 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).