GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 18:18:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus genome assembly, chromosome: 1.
OW971552.1:87201838-87201855
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG87201838TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971573.1:87116340-87116357
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG87116340TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971594.1:87235360-87235377
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG87235360TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971636.1:87398972-87398989
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG87398972TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus molossinus genome assembly, chromosome: 1.
OW971658.1:90339733-90339750
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG90339733TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACATGAGTAA
Mus spretus genome assembly, chromosome: 1.
OW971678.1:88763241-88763258
TGCTCTGCTTGGTTTCCAGTAGATCCTGGG88763241TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971699.1:86518148-86518165
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG86518148TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971720.1:87526077-87526094
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG87526077TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971741.1:87087355-87087372
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG87087355TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus musculus genome assembly, chromosome: 1.
OW971762.1:86733691-86733708
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG86733691TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971783.1:87161482-87161499
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG87161482TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971804.1:91585303-91585320
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG91585303TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus castaneus genome assembly, chromosome: 1.
OW971825.1:86850996-86851013
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG86850996TCACAGGGACCATCTGCGCATCACAGCGTTCTTAATCCACACAAGTAA
Mus musculus genome assembly, chromosome: 1.
OW971846.1:87271002-87271019
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG87271002TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OX389795.1:94758447-94758464
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG94758447TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OX390145.1:90862294-90862311
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG90862294TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Mus musculus genome assembly, chromosome: 1.
OX439014.1:95162360-95162377
TGCTCTGCTTGGTTTCCAGCAGATCCTGGG95162360TCACAGGGACCATCTGCGCATCGCAGTGTTCTTAATCCACACGAGTAA
Cottoperca gobio genome assembly, chromosome: 10.
LR131917.1:10544674-10544691
CAAGAGAACACTAACAAACATGTGGAATGT10544674TCACAGGGACCATCTGCGTTTTTCCGATCCACTTTTTTGTCTCTTGTA
Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome.
CP062983.1:1800382-1800399
TCATAGGGGCCGAGGTTATTGGTGAAGGTA1800382TCACAGGGACCATCTGCGACGAGGGCCAACGGATAGCCGCGGGCCTTG
Carpatolechia fugitivella genome assembly, chromosome: 4.
OX579649.1:4316353-4316370
TGAATGTGGGATGGATGAAATGGCGACAGG4316353TCACAGGGACCATCTGCGACTCCCGATTCCCTTTAAAATTAAATGGAA
Xylota segnis genome assembly, chromosome: 2.
OY757237.1:101558181-101558198
AGAGGAGTGACAGATGGTACGTGATTCTAA101558181TCACAGGGACCATCTGCGAAGATTTGGTATCTAAGCAGCTCCGTCTGA
Mus musculus chromosome 1, clone RP24-548K2, complete sequence.
AC120878.10:61557-61574
TTACTCGTGTGGATTAAGAACACTGCGATG61557CGCAGATGGTCCCTGTGACCCAGGATCTGCTGGAAACCAAGCAGAGCA
Mus musculus chromosome 1, clone RP24-154L11, complete sequence.
AC157799.4:100144-100161
TTACTCGTGTGGATTAAGAACACTGCGATG100144CGCAGATGGTCCCTGTGACCCAGGATCTGCTGGAAACCAAGCAGAGCA
Mus musculus domesticus DNA, BAC clone: B6Ng01-009C18, 3' end.
DH845187.1:56-73
TTACTCGTGTGGATTAAGAACACTGCGATG56CGCAGATGGTCCCTGTGACCCAGGATCTGCTGGAAACCAAGCAGAGCA
Mus musculus domesticus DNA, BAC clone: B6Ng01-235C12, 3' end.
GA046710.1:56-73
TTACTCGTGTGGATTAAGAACACTGCGATG56CGCAGATGGTCCCTGTGACCCAGGATCTGCTGGAAACCAAGCAGAGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCACAGGGACCATCTGCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACAGGGACCATCTGCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.301 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=TCACAGGGACCATCTGCG&k=0&no_gap=0&offset=0&limit=50
0.453 | 0.152 | search_minus_done; http://172.18.8.135:50400/match?q=CGCAGATGGTCCCTGTGA&k=0&no_gap=0&offset=0&limit=29
0.456 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).