GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 10:43:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scyliorhinus canicula genome assembly, chromosome: 8.
LR744037.1:38320158-38320177
CCCTAACCATCACCTCTGCCCACCACCACC38320158TCACCAACCCACAACCACATGAGACCAGCGACCACGTAGAGCCTCTTTTA
TSA: Camellia sinensis Singletons480.Casi mRNA sequence.
HP760623.1:249-268
ACTCGACGTAGTAGGCCTTTTGGAATGCCT249TCACCAACCCACAACCACATATGGCACCCAAGCACTGAGCCACAATGTAC
TSA: Camellia sinensis tea_rep_c11016 mRNA sequence.
KA290346.1:520-539
ACTCGACGTAGTAGGCCTTTTGGAATGCCT520TCACCAACCCACAACCACATATGGCACCCAAGCACTGAGCCACAATGTAC
Horisme vitalbata genome assembly, chromosome: 1.
OX638088.1:45568727-45568746
ACACAAAAACTACGCTTCTCACCAATACAA45568727TCACCAACCCACAACCACATTGTTGGCAGTGTAATAACAGCCAAAAAAAG
Sequence 14765 from patent US 10766935.
MV658160.1:512-531
GTACATTGTGGCTCAGTGCTTGGGTGCCAT512ATGTGGTTGTGGGTTGGTGAAGGCATTCCAAAAGGCCTACTACGTCGAGT
Sequence 14765 from patent US 11566053.
OS281639.1:512-531
GTACATTGTGGCTCAGTGCTTGGGTGCCAT512ATGTGGTTGTGGGTTGGTGAAGGCATTCCAAAAGGCCTACTACGTCGAGT
Camellia sinensis mRNA, clone: LR01H08, 5' end sequence, expressed in lateral roots.
FS943411.1:510-529
GTACATTGTGGCTCAGTGCTTGGGTGCCAT510ATGTGGTTGTGGGTTGGTGAAGGCATTCCAAAAGGCCTACTACGTCGAGT
EST0610 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_02_35.M13+_C05.ab1, mRNA sequence.
GE650283.1:125-144
GTACATTGTGGCTCAGTGCTTGGGTGCCAT125ATGTGGTTGTGGGTTGGTGAAGGCATTCCAAAAGGCCTACTACGTCGAGT
EST1050 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_08_34.M13+_B05.ab1, mRNA sequence.
GE650723.1:551-570
GTACATTGTGGCTCAGTGCTTGGGTGCCAT551ATGTGGTTGTGGGTTGGTGAAGGCATTCCAAAAGGCCTATTACGTCGAGT
EST1394 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_12_91.M13+_C12.ab1, mRNA sequence.
GE651067.1:528-547
GTACATTGTGGCTCAGTGCTTGGGTGCCAT528ATGTGGTTGTGGGTTGGTGAAGGCATTCCAAAAGGCCTACTACGTCGAGT
SSH4_PB_135_TRA_8027 Camellia sinensis ALT78 cDNA library Camellia sinensis cDNA 5', mRNA sequence.
HS392935.1:374-393
GTACATTGTGGCTCAGTGCTTGGGTGCCAT374ATGTGGTTGTGGGTTGGTGAAGACATTCCAAAAGGCCTACTACGTCGAGT
TSA: Schima mertensiana mRNA, contig: Sm_rep_c8295.
FX153872.1:331-350
GTACATGCTGGCTCAATGTTTGGGCGCCAT331ATGTGGTTGTGGGTTGGTGAAATCATTTCAAAAGGCCTACTATGTCAATT
Camellia sinensis aquaporin protein PIP2-1 (PIP2-1) mRNA, complete cds.
MH167483.1:469-488
GTACATTGTGGCTCAGTGCTTGGGTGCCAT469ATGTGGTTGTGGGTTGGTGAAGGCATTCCAAAAGGCCTACTACGTCGAGT
Cornus suecica genome assembly, chromosome: 7.
OY998244.1:66529032-66529051
GTACATGGTGGCTCAGTGTCTCGGGGCCAT66529032ATGTGGTTGTGGGTTGGTGAAGGCCTTCCAAAAAGCCTACTATGTCAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCACCAACCCACAACCACAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACCAACCCACAACCACAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.127 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=TCACCAACCCACAACCACAT&k=0&no_gap=0&offset=0&limit=50
0.727 | 0.600 | search_minus_done; http://172.18.8.135:50400/match?q=ATGTGGTTGTGGGTTGGTGA&k=0&no_gap=0&offset=0&limit=46
0.734 | 0.007 | cgi_end;

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