GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:00:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES05B06, 5' end sequence.
FY384012.1:90-109
CAGTCTCCTCTGCGCACGTTATCATCATCA90TCACCCTCATTTTCTACGCCTACACACCTCCTTAACGTGCGCCGTCGTCC
Dianthus caryophyllus mRNA, clone: CES15H03, 5' end sequence.
FY387941.1:104-123
CAGTCTCCTCTGCGCACGTTATCATCATCA104TCACCCTCATTTTCTACGCCTACACACCTCCTTAACGTGCGCCGTCGTCC
Dianthus caryophyllus mRNA, clone: CES24G23, 5' end sequence.
FY391323.1:28-47
GCTCCTCTGCGCACGTTATCATCATCA28TCACCCTCATTTTCTACGCCTACACACCTCCTTAACGTGCGCCGTCGTCC
Eristalinus sepulchralis genome assembly, chromosome: 4.
OX122885.1:2112254-2112273
TTGTTCTCTTTCCCGCAGCAGTTGTCGCCG2112254TCACCCTCATTTTCTACGCCCCCTTCGTCGTGATACTCGTTTGGCTGCCC
Philonthus spinipes genome assembly, chromosome: 15.
OY720314.1:10184358-10184377
ATCAAAATATTAATTTAATCAATAAAATAA10184358TCACCCTCATTTTCTACGCCTTTTTTTTATTTATATGCATGTTTTCAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCACCCTCATTTTCTACGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACCCTCATTTTCTACGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.346 | 0.337 | search_plus_done; http://172.18.8.135:50400/match?q=TCACCCTCATTTTCTACGCC&k=0&no_gap=0&offset=0&limit=50
0.375 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=GGCGTAGAAAATGAGGGTGA&k=0&no_gap=0&offset=0&limit=45
0.375 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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