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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:21:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pelobates cultripes genome assembly, chromosome: 04.
OW240915.1:39875683-39875702
CTTGACAATGGTGATATTTGTCAGGAGTTG39875683TCACGATGGCAGATGTGACTTCAAAACACTGAGAATTCCTCTAAAAGTAG
GR__Ea27I14.r GR__Ea Gossypium raimondii cDNA clone GR__Ea27I14 3', mRNA sequence.
CO070477.1:696-715
TGACACTGAAGAAGATTACCCTTACACAGG696TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Ea46P14.r GR__Ea Gossypium raimondii cDNA clone GR__Ea46P14 3', mRNA sequence.
CO082388.1:417-436
TGACACTGAAGAAGATTACCCTTACACAGG417TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Ea21A18.r GR__Ea Gossypium raimondii cDNA clone GR__Ea21A18 3', mRNA sequence.
CO097268.1:656-675
TGACACTGAAGAAGATTACCCTTACACAGG656TCACGATGGCAGATGTGACTCCTACC
GR__Eb0034L23.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0034L23 3', mRNA sequence.
CO104870.1:717-736
TGACACTGAAGAAGATTACCCTTACACAGG717TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb0036I06.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0036I06 3', mRNA sequence.
CO106044.1:456-475
TGACACTGAAGAAGATTACCCTTACACAGG456TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb0042O17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0042O17 3', mRNA sequence.
CO110161.1:221-240
TGACACTGAAGAAGATTACCCTTACACAGG221TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb019A01.r GR__Eb Gossypium raimondii cDNA clone GR__Eb019A01 3', mRNA sequence.
CO116641.1:738-757
TGACACTGAAGAAGATTACCCTTACACAGG738TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb020G01.r GR__Eb Gossypium raimondii cDNA clone GR__Eb020G01 3', mRNA sequence.
CO118165.1:532-551
TGACACTGAAGAAGATTACCCTTACACAGG532TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb020I15.r GR__Eb Gossypium raimondii cDNA clone GR__Eb020I15 3', mRNA sequence.
CO118268.1:753-772
TGACACTGAAGAAGATTACCCTTACACAGG753TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb023A01.r GR__Eb Gossypium raimondii cDNA clone GR__Eb023A01 3', mRNA sequence.
CO119859.1:221-240
TGACACTGAAGAAGATTACCCTTACACAGG221TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb024K07.r GR__Eb Gossypium raimondii cDNA clone GR__Eb024K07 3', mRNA sequence.
CO120818.1:338-357
TGACACTGAAGAAGATTACCCTTACACAGG338TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb07A18.f GR__Eb Gossypium raimondii cDNA clone GR__Eb07A18 5', mRNA sequence.
CO124250.1:710-729
TGACACTGAAGAAGATTACCCTTACACAGG710TCACGATGGCAGATGTGACTCCTACCGGCAAAAAACTGCCAAGGTTGTTA
GR__Eb07G17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb07G17 5', mRNA sequence.
CO124471.1:710-729
TGACACTGAAGAAGATTACCCTTACACAGG710TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb10P15.f GR__Eb Gossypium raimondii cDNA clone GR__Eb10P15 5', mRNA sequence.
CO126761.1:710-729
TGACACTGAAGAAGATTACCCTTACACAGG710TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb33N07.r GR__Eb Gossypium raimondii cDNA clone GR__Eb33N07 3', mRNA sequence.
CO130859.1:689-708
TGACACTGAAGAAGATTACCCTTACACAGG689TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb43C17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb43C17 3', mRNA sequence.
CO131066.1:221-240
TGACACTGAAGAAGATTACCCTTACACAGG221TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GR__Eb43L02.r GR__Eb Gossypium raimondii cDNA clone GR__Eb43L02 3', mRNA sequence.
CO131412.1:782-801
TGACACTGAAGAAGATTACCCTTACACAGG782TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGGTGTTT
EST1074147 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT563507.1:699-718
TGACACTGAAGAAGATTACCCTTACACAGG699TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
GH_HYPS_01-01-12R_B12_InvR_14Apr04_094 Stem - 7 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW224594.1:5-24
CAGG5TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
UFL_516_48 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES794979.1:313-332
TGACACTGAAGAAGATTACCCTTACACAGG313TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
UFL_620_93 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES805423.1:701-720
TGACACTGAAGAAGATTACCCTTACACAGG701TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
UFL_344_66 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES827221.1:183-202
TGACACTGAAGAAGATTACCCTTACACAGG183TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
C01-70C01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK790266.1:49-68
TAACACTGAAGAAGATTACCCTTACACAGG49TCACGATGGCAGATGTGACTCCTACCGGCAGGTAGGTATTTAGTTTCAGG
G08-69G08 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK791526.1:53-72
TAACACTGAAGAAGATTACCCTTACACAGG53TCACGATGGCAGATGTGACTCCTACCGGCAGGTAGGTATTTAGTTTCAGG
ndcxb0_0011_F08.ab1 Upland cotton seedling roots at salt stress 3h (ndcxb) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ372049.1:155-174
TAACACTGAAGAAGATTACCCTTACACAGG155TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
ndcxe0_0021_G04.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ381333.1:112-131
TAACACTGAAGAAGATTACCCTTACACAGG112TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
ndcxf0_0031_A01.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ384965.1:177-196
TGACACTGAAGAAGATTACCCTTACACAGG177TCACGATGGCAGATGTGACTCCTACCGGCAGAAAACTGCCAAGGTTGTTA
Gossypioides kirkii chromosome KI_05.
CP032247.1:15057901-15057920
TGACACTGAAGAAGATTACCCTTACACAGG15057901TCACGATGGCAGATGTGACTCCTACCGGCAGGTAGGTATTTAGTTTCAGA
Gossypium raimondii isolate D5-4 chromosome D5_05.
CP032557.1:16751370-16751389
TGACACTGAAGAAGATTACCCTTACACAGG16751370TCACGATGGCAGATGTGACTCCTACCGGCAGGTAGGTATTTAGTTTCAGA
Gossypium turneri isolate D10-2 chromosome D10_05.
CP032575.1:43566420-43566439
TCTGAAACTAAATACCTACCTGCCGGTAGG43566420AGTCACATCTGCCATCGTGACCTGTATAAGGGTAATCTTCTTCAGTGTCA
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:170498805-170498824
TCTGAAACTAAAGACCTACCTGCCGGTAGG170498805AGTCACATCTGCCATCGTGACCCGTGTAAGGGTAATCTTCTTCAGTGTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCACGATGGCAGATGTGACT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACGATGGCAGATGTGACT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.694 | 1.685 | search_plus_done; http://172.18.8.135:50400/match?q=TCACGATGGCAGATGTGACT&k=0&no_gap=0&offset=0&limit=50
1.788 | 0.094 | search_minus_done; http://172.18.8.135:50400/match?q=AGTCACATCTGCCATCGTGA&k=0&no_gap=0&offset=0&limit=20
1.789 | 0.002 | cgi_end;

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