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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 08:29:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

uncultured Marinobacterium sp. isolate a0847272-73cf-4931-aaf8-19bea7868d16 genome assembly, chromosome: 1.
OY782520.1:1577406-1577425
GCGGGATCTCGAACGCACCCGGTACACGGA1577406TCACGCGGATGTTCTCTTCATCCACACCGTGACGGGTCAGGGCGTCAATA
uncultured Marinobacterium sp. isolate fe3c676d-63b0-40a1-b428-f9f2f0dbe5b7 genome assembly, chromosome: 1.
OY782668.1:1671532-1671551
GCGGGATCTCGAACGCACCCGGTACACGGA1671532TCACGCGGATGTTCTCTTCATCCACACCGTGACGGGTCAGGGCGTCAATA
Brassica oleracea var. viridis mRNA, clone: KALE-038B21, 5' end sequence.
DK470121.1:139-158
CTGATCTGAAGAAGAAGATGGGAATCCTGT139TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGGATCCTC
Brassica oleracea var. viridis mRNA, clone: KALE-098H16, 5' end sequence.
DK493214.1:96-115
CGGAGAAGAAGAAGAAGATGGGGATCCTGT96TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
Brassica oleracea var. viridis mRNA, clone: KALE-100C22, 5' end sequence.
DK493867.1:101-120
CTGATCTGAAGAAGAAGATGGGAATCCTGT101TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGGATCCTC
Brassica oleracea var. viridis mRNA, clone: KALE-098H16, 3' end sequence.
DK552794.1:84-103
GGAGTAAGAAGAAGAAGATGTGGATCCTGT84TCACGCGGATGTTCTCTTCAGTGTTTTGCAACAAAGAAGGTTGTTTCCTC
Brassica oleracea var. viridis mRNA, clone: KALE-100C22, 3' end sequence.
DK553443.1:7-26
TCCTGT7TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGGATCCTC
47RDOAH_UP_021_E10_14AUG2004_072 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY027412.1:93-112
CGGAGAAGAAGAAGAAGATGGGGATCCTGT93TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNBS8DCT_UP_025_G02_17APR2005_004 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE460202.1:95-114
CTGATCCGAAGAAGAAGATGGGAATCCTGT95TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNBS8DCT_UP_030_G03_17APR2005_019 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE460568.1:78-97
CGGAGAAGAAGAAGAAGATGGGGATCCTGT78TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNSCS3CT_UP_022_F03_11JAN2005_021 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466712.1:118-137
CTGATCCGAAGAAGAAGATGGGAATCCTGT118TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
44JK5DM_UP_009_H09_26MAY2004_065 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES266151.1:64-83
CTGATCTGAAGAAGAAGATGGGAATCCTGT64TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGGATCCTC
24RDBNH_UP_178_D03_14DEC2006_025 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES922449.1:114-133
ATCTGAAGAAGAAGAAAATGGGAATCCTGT114TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNSCS2CT_UP_074_E10_18APR2007_072 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV021228.1:91-110
CTGATCCGAAGAAGAAGATGGGAATCCTGT91TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNSCS2CT_UP_130_G05_21APR2007_035 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV025243.1:92-111
CGGAGAAGAAGAAGAAGATGGGGATCCTGT92TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNSCS3CT_UP_151_C09_11MAY2007_075 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV048674.1:81-100
ATCTGAAGAAGAAGAAAATGGGAATCCTGT81TCACGCGGATGTTCTCTTCAGTGCTTGGCAACAAAGAAGCTCGTATCCTC
BNSCS3CT_UP_241_C10_17MAY2007_076 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV056026.1:98-117
CGGAGAAGAAGAAGAAGATGGGGATCCTGT98TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNSCS3CT_UP_256_F08_19MAY2007_054 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV057221.1:92-111
CGGAGAAGAAGAAGAAGATGGGGATCCTGT92TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNSCS4CT_UP_072_C04_18MAY2007_028 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV063836.1:102-121
CGGAGAAGAAGAAGAAGATGGGGATCCTGT102TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
0195996 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV097196.1:115-134
ATCTGAAGAAGAAGAAAATGGGAATCCTGT115TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
RR2BB63TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV538914.1:95-114
CGTTTGATCCGAAAAAGATGGGAATCCTGT95TCACGCGGATGTTCTCTTCAGTTTTCGGCAACAAAGAAGCTCGTATCCTC
BR090328 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-028E09 5', mRNA sequence.
EX104038.1:106-125
CTGATCCGAAGAAGAAGATGGGAATCCTGT106TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BR119775 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-64G01 5', mRNA sequence.
EX135945.1:86-105
CTGATCCGAAGAAGAAGATGGGAATCCTGT86TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
RS3BZ55TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX903693.1:121-140
CTGATCCGAAGAAGAAGATGGGAACCCTGT121TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
RR1E779TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY900600.1:79-98
CTGATCCGAAGAAGAAGATGGGAATCCTGT79TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
RR2D729TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY905342.1:103-122
CTGATCCGAAGAAGAAGATGGGAATCCTGT103TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
RR3D071TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY912890.1:103-122
CTGATCCGAAGAGGAAGATGGGAATCCTGT103TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
RS1EN76TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD561403.1:123-142
CTGATCCGAAGAAGAAGATGGGAATCCTGT123TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
RS1GG19TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD939619.1:88-107
CTGATCCGAAGAAGAAGATGGGAATCCTGT88TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
RR3GN45TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD980364.1:120-139
CTGATCCGAAGAAGAAGATGGGAATCCTGT120TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
BN18DYSC_UP_084_A11_5MAR2008_095 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG560265.1:117-136
CTGATCCGAAGAAGAAGATGGGAATCCTGT117TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
13JKBNM2_UP_057_B07_02OCT2007_061 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR438662.1:48-67
CTGATCCGAAGAAGAAGATGGGAATCCTGT48TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
BNAESTF080 Mustard flower buds Brassica rapa cDNA clone F0080 5' similar to ADP-ribosylation factor, mRNA sequence.
L33516.2:103-122
CTGATCCGAAGAAGAAGATGGGAATCCTGT103TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1834.
FX665740.1:147-166
CTGATCCGAAGAAGAAGATGGGAATCCTGT147TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49059.
FX784256.1:129-148
CTGATCCGAAGAAGAAGATGGGAATCCTGT129TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:59433442-59433461
CTGATCTGAAGAAGAAGATGGGAATCCTGT59433442TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGGATCCTC
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:20159303-20159322
CTGATCCGAAGAAGAAGATGGGAATCCTGT20159303TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:7904225-7904244
CGGAGAAGAAGAAGAAGATGGGGATCCTGT7904225TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
Brassica napus genome assembly, chromosome: A04.
HG994358.1:14584340-14584359
CTGATCCGAAGAAGAAGATGGGAATCCTGT14584340TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
Brassica napus genome assembly, chromosome: C04.
HG994368.1:53689384-53689403
CTGATCTGAAGAAGAAGATGGGAATCCTGT53689384TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGGATCCTC
Brassica rapa genome, scaffold: A04.
LR031576.1:13485307-13485326
CTGATCCGAAGAAGAAGATGGGAATCCTGT13485307TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:53085026-53085045
CTGATCTGAAGAAGAAGATGGGAATCCTGT53085026TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGGATCCTC
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:13736120-13736139
CTGATCCGAAGAAGAAGATGGGAATCCTGT13736120TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:37953177-37953196
CTGATCCGAAGAAGAAGATGGGAATCCTGT37953177TCACGCGGATGTTCTCTTCAGTGTTCGGCAACAAAGAAGCTCGTATCCTC
Brassica campestris small GTP-binding protein ARF (BARF-1) mRNA, complete cds.
U38470.1:103-122
CTGATCCGAAGAAGAAGATGGGAATCCTGT103TCACGCGGATGTTCTCTTCAGTGTTTGGCAACAAAGAAGCTCGTATCCTC
Eristalis pertinax genome assembly, chromosome: 3.
OU026147.1:22391517-22391536
AACAATCAGTACCATTTTTTTCAGGGACGG22391517TCACGCGGATGTTCTCTTCAGTTAATAGCAGCTCCTTTGTCCTTACATCG
uncultured Marinobacterium sp. isolate 9dab0b5a-edc3-4719-b21f-a034148b1e2d genome assembly, chromosome: 1.
OY760936.1:2099322-2099341
TATTGACGCCCTGACCCGTCACGGTGTGGA2099322TGAAGAGAACATCCGCGTGATCCGTGTACCGGGTGCGTTCGAGATCCCGC
uncultured Marinobacterium sp. isolate 9cf205ba-bb1a-4792-878f-362de8ec88fb genome assembly, chromosome: 1.
OY776635.1:2875402-2875421
TATTGACGCCCTGACCCGTCACGGTGTGGA2875402TGAAGAGAACATCCGCGTGATCCGTGTACCGGGTGCGTTCGAGATCCCGC
RS3BZ55JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EX907709.1:644-663
GAGGATACGAGCTTCTTTGTTGCCGAACAC644TGAAGAGAACATCCGCGTGAACAGGGTTCCCATCTTCTTCTTCGGATCAG
RS3G818JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD951438.1:646-665
GAGGATACGAGCTTCTTTGTTGCCGAACAC646TGAAGAGAACATCCGCGTGAACAGGATTCCCATCTTCTTCTTCGGATCAG
Raphanus sativus mRNA, clone: RSCF05F20, 5' end sequence.
FY429159.1:757-776
GAGGATACGAGCTTCTTTGTTGCCGAACAC757TGAAGAGAACATCCGCGTGAACAGGATTCCCATCTTCTTCTTCGGATCAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_17993.
FX710983.1:713-732
GAGGATACGAGCTTCTTTGTTGCCAAACAC713TGAAGAGAACATCCGCGTGAACAGGATTCCCATCTTCTTCTTCGGATCAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_32165.
FX784877.1:192-211
GAGGATACGAGCTTCTTTGTTGCCGAACAC192TGAAGAGAACATCCGCGTGAACAGGATTCCCATCTTCTTCTTCGGATCAG
TSA: Raphanus sativus RS26897 mRNA sequence.
JT811444.1:716-735
GAGGATACGAGCTTCTTTGTTGCCGAACAC716TGAAGAGAACATCCGCGTGAACAGGATTCCCATCTTCTTCTTCGGATCAG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:33863561-33863580
GAGGATACGAGCTTCTTTGTTGCCAAACAC33863561TGAAGAGAACATCCGCGTGAACAGGATCCCCATCTTCTTCTTCTTCTCCG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:43151481-43151500
GAGGATACGAGCTTCTTTGTTGCCAAACAC43151481TGAAGAGAACATCCGCGTGAACAGGATCCCCATCTTCTTCTTCTTCTCCG
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:15697324-15697343
GAGGATACGAGCTTCTTTGTTGCCGAACAC15697324TGAAGAGAACATCCGCGTGAACAGGATTCCCATCTTCTTCTTCGGATCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCACGCGGATGTTCTCTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACGCGGATGTTCTCTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.117 | 2.108 | search_plus_done; http://172.18.8.135:50400/match?q=TCACGCGGATGTTCTCTTCA&k=0&no_gap=0&offset=0&limit=50
2.512 | 0.396 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAGAGAACATCCGCGTGA&k=0&no_gap=0&offset=0&limit=4
2.520 | 0.007 | cgi_end;

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