GGGenome | Results

Help | Japanese

2025-04-08 14:40:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:66253075-66253094

GAAAGAGATATATTATTTTCAAAAGAGATA66253075TCACTTCCTAAATCATGGACATTTCCAATAATGGGAAATACCTCTCACCC

Lotus japonicus genomic DNA, chromosome 6, clone: LjT13B14, TM1164.
AP007859.2:14549-14568

GGGTGAGAGGTATTTCCCATTATTGGAAAT14549GTCCATGATTTAGGAAGTGATATCTCTTTTGAAAATAATATATCTCTTTC

Lotus japonicus genomic DNA, chromosome 6, clone: LjB69N14, BM1484.
AP008107.2:128035-128054

GGGTGAGAGGTATTTCCCATTATTGGAAAT128035GTCCATGATTTAGGAAGTGATATCTCTTTTGAAAATAATATATCTCTTTC

Populus nigra genome assembly, chromosome: 11.
OX637682.1:11539750-11539769

GTTTGAGTGTTATCACCTCCCAAATCCGAA11539750GTCCATGATTTAGGAAGTGAAGAAAACACGCTCAAGGTTTAAATTGTCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.104 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=TCACTTCCTAAATCATGGAC&k=0&no_gap=0&offset=0&limit=50
0.128 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=GTCCATGATTTAGGAAGTGA&k=0&no_gap=0&offset=0&limit=49
0.130 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).