GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sarcophilus harrisii genome assembly, chromosome: 1.
LR735554.1:50483073-50483092
AGAAAGGAGAAGGTAAAGAGACAAAATTCT50483073TCAGAGGCAGGTTTTGCTTTCTTCTTTTAATCTACCTGAAATGAAGCCTT
Astatotilapia calliptera genome assembly, chromosome: 16.
LS420034.2:33656367-33656386
AACCTTTGTAGCTCTATGAAGACGTTGTTC33656367TCAGAGGCAGGTTTTGCTTTGTGTTTATTTGAAGTGCATATTTGGCCTTT
Acipenser ruthenus genome assembly, chromosome: 10.
OV737691.1:3279391-3279410
CTATTCCAATAAAGATGCAGTATTATAGAG3279391TCAGAGGCAGGTTTTGCTTTGAATTCTTCTAAATGAGAAGTCATTTGCTG
Acipenser ruthenus genome assembly, chromosome: 10.
OV754679.1:3267307-3267326
CTATTCCAATAAAGATGCAGTATTATAGAG3267307TCAGAGGCAGGTTTTGCTTTGAATTCTTCTAAATGAGAAGTCATTTGCTG
Neolamprologus multifasciatus genome assembly, chromosome: 16.
OY755032.1:33817002-33817021
AACCTTTGTAGCTCTATGAAGAAGTTGTTC33817002TCAGAGGCAGGTTTTGCTTTGTGTTTATTTGAAGTGCATATTTGGCCTTT
Cinclus cinclus genome assembly, chromosome: 3.
OY759679.1:46126378-46126397
TGGCACCCAACCCTAAAGTCAAACACGTAC46126378TCAGAGGCAGGTTTTGCTTTCCATTTCTGTTGTGTTTCATGTGATTCCCA
OL9813F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9813, mRNA sequence.
EH430771.1:512-531
TATGCAGCGTTTATGAACGGAGACACTTTT512TCAGAGGCAGGTTTTGCTTTGGATGGGCTGGTAGCAGCAGCAGCAGAAGA
RR2BF14JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV543060.1:560-579
TATGCAGCATTAATAAATGGAGACACTTTT560TCAGAGGCAGGTTTTGCTTTGGATGGGCTAGCAGCAGCAGCAGCAGCAGA
RR4BS70JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX774698.1:592-611
TATGCAGCATTAATAAATGGAGACACTTTT592TCAGAGGCAGGTTTTGCTTTGGATGGGGTAGCAGCAGCAGCAGCAGAAAC
RR3DZ52JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY911653.1:595-614
TATGCAGCATTAATAAATGGAGACACTTTT595TCAGAGGCAGGTTTTGCTTTGGATGGGCTAGCAGCAGCAGCAGAAACTGG
RR2EN01JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD537045.1:570-589
TATGCAGCATTAATAAATGGAGACACTTTT570TCAGAGGCAGGTTTTGCTTTTGGATGGGCTAGCAG
RR2EO08JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD537111.1:580-599
TATGCAGCATTAATAAATGGAGACACTTTT580TCAGAGGCAGGTTTTGCTTTGGATGGGCTAGCAGCAGCAGCAGCAGCAGA
RR3F223JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD545981.1:598-617
TATGCAGCATTAATAAATGGAGACACTTTT598TCAGAGGCAGGTTTTGCTTTGGATGGGCTAGCAGCAGCAGCAGAAACTGA
RR4FQ48JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD555647.1:598-617
TATGCAGCATTAATAAATGGAGACACTTTT598TCAGAGGCAGGTTTTGCTTTGGATGGGGTAGCAGCAGCAGCAGCAGAAAC
RR4FX82JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD982568.1:598-617
TATGCAGCATTAATAAATGGAGACACTTTT598TCAGAGGCAGGTTTTGCTTTGGATGGGGTAGCAGCAGCAGCAGCAGAAAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6096.
FX706210.1:609-628
TATGCAGCATTTATGAACGGAGACACTTTC609TCAGAGGCAGGTTTTGCTTTGGATGGGCTAGCATCAGCAGAAGCAGACAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17567.
FX792120.1:609-628
TATGCAGCATTAATAAATGGAGACACTTTT609TCAGAGGCAGGTTTTGCTTTGGATGGGGTAGCAGCAGCAGCAGCAGAAAC
TSA: Ophthalmotilapia ventralis contig45150.Opvepool mRNA sequence.
JL596398.1:1104-1123
AACCTTTGTGGCTCCATGACGAAGTTGTTC1104TCAGAGGCAGGTTTTGCTTTGTGTTTCTTTGAAGTGCATATTTGGCCTTT
BOT01-10M4TR BOT01 Brassica oleracea genomic clone BOT01-10M4, genomic survey sequence.
FI682956.1:410-429
TATGCAGCGTTTATGAACGGAGACACTTTT410TCAGAGGCAGGTTTTGCTTTGGATGGGCTGGTAGCAGCAGCAGCAGAAGA
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:13823655-13823674
TATGCAGCATTAATAAATGGAGACACTTTT13823655TCAGAGGCAGGTTTTGCTTTGGATGGGGTAGCAGCAGCAGCAGCAGAAAC
Camptogramma bilineatum genome assembly, chromosome: 16.
OY292466.1:13737027-13737046
TGACCGAGTGAGCAAAGCGTTTAGAGATTT13737027TCAGAGGCAGGTTTTGCTTTTTAGTTTGCAAACAAAACTAACATGGTTAG
Lipophrys pholis genome assembly, chromosome: 22.
OY726554.1:2221101-2221120
GAGGTTCCAAGACCAAGATATGTGGTTTCC2221101AAAGCAAAACCTGCCTCTGACGTTCTCCTGTCCCGCTGAAACTTATTGAC
Brassica oleracea var. viridis mRNA, clone: KALE-001C07, 5' end sequence.
DK456003.1:634-653
TCTTCTGCTGCTGCTGCTACCAGCCCATCC634AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-036N08, 5' end sequence.
DK469629.1:587-606
TCTTCTGCTGCTGCTGCTACCAGCCCATCC587AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-037G20, 5' end sequence.
DK469856.1:587-606
TCTTCTGCTGCTGCTGCTACCAGCCCATCC587AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-064D21, 5' end sequence.
DK480107.1:585-604
TCTTCTGCTGCTGCTGCTACCAGCCCATCC585AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-070G19, 5' end sequence.
DK482471.1:585-604
TCTTCTGCTGCTGCTGCTACCAGCCCATCC585AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-076L05, 5' end sequence.
DK484873.1:579-598
TCTTCTGCTGCTGCTGCTACCAGCCCATCC579AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-117E19, 5' end sequence.
DK500404.1:579-598
TCTTCTGCTGCTGCTGCTACCAGCCCATCC579AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-128E03, 5' end sequence.
DK504597.1:638-657
TCTTCTGCTGCTGCTGCTACCAGCCCATCC638AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-155L07, 5' end sequence.
DK515085.1:561-580
TCTTCTGCTGCTGCTGCTACCAGCCCATCC561AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-156N10, 5' end sequence.
DK515519.1:579-598
TCTTCTGCTGCTGCTGCTACCAGCCCATCC579AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-001C07, 3' end sequence.
DK515635.1:127-146
TCTTCTGCTGCTGCTGCTACCAGCCCATCC127AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-036N08, 3' end sequence.
DK529248.1:361-380
TCTTCTGCTGCTGCTGCTACCAGCCCATCC361AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-037G20, 3' end sequence.
DK529476.1:364-383
TCTTCTGCTGCTGCTGCTACCAGCCCATCC364AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-064D21, 3' end sequence.
DK539703.1:183-202
TCTTCTGCTGCTGCTGCTACCAGCCCATCC183AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-070G19, 3' end sequence.
DK542068.1:230-249
TCTTCTGCTGCTGCTGCTACCAGCCCATCC230AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-076L05, 3' end sequence.
DK544467.1:233-252
TCTTCTGCTGCTGCTGCTACCAGCCCATCC233AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-117E19, 3' end sequence.
DK559970.1:205-224
TCTTCTGCTGCTGCTGCTACCAGCCCATCC205AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-128E03, 3' end sequence.
DK564161.1:187-206
TCTTCTGCTGCTGCTGCTACCAGCCCATCC187AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-155L07, 3' end sequence.
DK574657.1:206-225
TCTTCTGCTGCTGCTGCTACCAGCCCATCC206AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-156N10, 3' end sequence.
DK575091.1:196-215
TCTTCTGCTGCTGCTGCTACCAGCCCATCC196AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
48RDOAM_UP_022_H08_14AUG2004_050 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
DY015326.1:487-506
TCTTCTGCTGCTGCTGCTACCAGCCCATCC487AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
47RDOAH_UP_039_E12_17AUG2004_088 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY029253.1:572-591
TCTTCTGCTGCTGCTGCTACCAGCCCATCC572AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
hh_Ab_Pinky2003_000014867 Cichlid Pinky cDNA library 2003 Haplochromis burtoni cDNA clone hh_Ab_Pinky2003_000014867 5', mRNA sequence.
DY626413.1:163-182
AAAGGCCAAATATGCACTTCAAATAAACAC163AAAGCAAAACCTGCCTCTGAGAACAACGTCTTCATAGAGCTACAAAGGTT
RR2BF14TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV539216.1:513-532
TCTGCTGCTGCTGCTGCTGCTAGCCCATCC513AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR3A389TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV547878.1:494-513
TCAGTTTCTGCTGCTGCTGCTAGCCCATCC494AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCCGCATA
BR073859 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-031E03 5', mRNA sequence.
EX087569.1:558-577
GTGTCTGCTTCTGCTGATGCTAGCCCATCC558AAAGCAAAACCTGCCTCTGAGAAAGTGTCTCCGTTCATAAATGCTGCATA
BR075242 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-055E01 5', mRNA sequence.
EX088952.1:559-578
GTGTCTGCTTCTGCTGATGCTAGCCCATCC559AAAGCAAAACCTGCCTCTGAGAAAGTGTCTCCGTTCATAAATGCTGCATA
BR080514 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-147A11 5', mRNA sequence.
EX094224.1:492-511
GTGTCTGCTTCTGCTGATGCTAGCCCATCC492AAAGCAAAACCTGCCTCTGAGAAAGTGTCTCCGTTCATAAATGCTGCATA
RR1CR62TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX749838.1:534-553
GTTTCTGCTGCTGCTGCTGCTACCCCATCC534AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
TSA: Raphanus sativus RS15733 mRNA sequence.
JT800280.1:511-530
GTTTCTGCTGCTGCTGCTGCTACCCCATCC511AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:38990484-38990503
TCTTCTGCTGCTGCTGCTACCAGCCCATCC38990484AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:30209295-30209314
GTTTCTGCTGCTGCTGCTGCTACCCCATCC30209295AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
Dolomedes plantarius genome assembly, chromosome: 3.
OU015492.1:77157310-77157329
GACTCTAATGGAAATGGAGCACAAACTGAT77157310AAAGCAAAACCTGCCTCTGATGCTAGTGATGTTTGCAAGGAAAAACTTGA
Hydrotaea cyrtoneurina genome assembly, chromosome: 3.
OY282514.1:64934317-64934336
CGCAAAGTCTGCCCCTATCTACCGCATCAC64934317AAAGCAAAACCTGCCTCTGACTGTCTATTTTACACATGTGTGTCGTGACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAGAGGCAGGTTTTGCTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAGAGGCAGGTTTTGCTTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.283 | 1.274 | search_plus_done; http://172.18.8.135:50400/match?q=TCAGAGGCAGGTTTTGCTTT&k=0&no_gap=0&offset=0&limit=50
3.113 | 1.830 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGCAAAACCTGCCTCTGA&k=0&no_gap=0&offset=0&limit=29
3.136 | 0.023 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).