GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:58:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium dubium genome assembly, chromosome: 14.
OX638075.1:552268-552286
GAACCGGCATGATCTTCATCACTTCGTCTT552268TCAGAGTTGGACCGACGAGAGTGTCGATGATTTGGTGCTCCTTGATTGG
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:770126-770144
GAACCGGCATGATTTTCATCACTTCGTCTT770126TCAGAGTTGGACCGACGAGTGTGTCGATGATTTGATGCTCCTTGATTGG
Astragalus glycyphyllos genome assembly, chromosome: 4.
OY754310.1:69253701-69253719
GAACCGGCATGATTTTCATCACTTCGTCTT69253701TCAGAGTTGGACCGACGAGTGTGTCAATGATCTGATGCTCCTTGATGGG
Sparus aurata genome assembly, chromosome: 3.
LR537123.1:25776098-25776116
TTTGCAGGACAATTGAATTAATTATCTCCG25776098CTCGTCGGTCCAACTCTGAAGATGAAAATCCTCTCTTAGAGTCTCCTTG
PV_ABb022F12.F PV_ABb Panicum virgatum genomic 5', genomic survey sequence.
JM797371.1:540-558
CATACACCACCCCTTAAACGACCTGACGTC540CTCGTCGGTCCAACTCTGACCATGTGTCATGTGCCACCGTCATATGCCA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:63474718-63474736
CCAATCAAGGAGCATCAAATCATCGACACA63474718CTCGTCGGTCCAACTCTGAAAGATGAAGTGATGAAAATCATGCCGGTTC
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:58943145-58943163
CCAATCAAGGAGCATCAAATCATCGACACT58943145CTCGTCGGTCCAACTCTGAAAGACGAAGTGATGAAAATCATGCCGGTTC
Leistus spinibarbis genome assembly, chromosome: 9.
OW121800.1:2831120-2831138
AATTCGATTTACGTTTGCGTAATTTCAACT2831120CTCGTCGGTCCAACTCTGATGACAAATATTATTCGATTATGGATTAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCAGAGTTGGACCGACGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAGAGTTGGACCGACGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=TCAGAGTTGGACCGACGAG&k=0&no_gap=0&offset=0&limit=50
0.168 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=CTCGTCGGTCCAACTCTGA&k=0&no_gap=0&offset=0&limit=47
0.171 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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