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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:21:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rhinatrema bivittatum genome assembly, chromosome: 16.
LR584402.1:29194976-29194995
CCAGACGGAGCAGGGCTGCCTCGTTGGAAG29194976TCAGATCCCCTTTTCTTTCAGATACAAATACAGTACCAAGGAAGCCTCCC
BNLGHi6960 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW186907.1:241-260
CTCTCTCGCTAACTCCATTTCTACTTTCCA241TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAATTCTCTCTCTCTCT
GR__Eb0046G06.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0046G06 3', mRNA sequence.
CO110761.1:8-27
CTTTCCA8TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAAGGCTCTCTCTCTCT
EST1058467 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547827.1:72-91
ATACCTCGCTAACTCCATTTCTACTTTCCA72TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAAGGCTCTCTCTCTCT
EST1080504 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT569864.1:215-234
CTCTCTCGCTAACTCCATTTCTACTTTCCA215TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAATTCTCTCTCTCTCT
UFL_033_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES837597.1:144-163
CTCTCTCGCTAACTCCATTTCTACTTTCCA144TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAATTCTCTCTCTCTCT
Gossypium hirsutum clone JESPR240 microsatellite sequence.
AF351478.1:133-152
ATACCTCGCTAACTCCATTTCTACTTTCCA133TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAAGGCTCTCTCTCTCT
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:22634887-22634906
CTCTCTCGCTAACTCCATTTCTACTTTCCA22634887TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAAGGCTCTCTCTCTCT
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:67663643-67663662
CTCTCTCGCTAACTCCATTTCTACTTTCCA67663643TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAATTCTCTCTCTCTCT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:45371340-45371359
CACTGATCAAATATGATTCAATGGTTCAAA45371340TCAGATCCCCTTTTCTTTCATTTTTTAAATGAAACCAACCCCCAAAATCC
Rosa rugosa genome assembly, chromosome: 1.
OY288191.1:55783901-55783920
GGTCAGATCCCCTTTTCAAGAATGTGTGGG55783901TCAGATCCCCTTTTCTTTCATTCTTGGGGATTTTCATTCCTAGAGAGGAG
Ligustrum vulgare genome assembly, chromosome: 5.
OY743172.1:24531792-24531811
TGTAAGATGCATGTCTTGTGAGTTTAGAAC24531792TCAGATCCCCTTTTCTTTCATCAAGTTACTGGGTTACATTAACGTGGCCA
Leucoma salicis genome assembly, chromosome: Z.
OX411803.1:16213003-16213022
CACGATAATTTTAATTACATTATTTAATGT16213003TCAGATCCCCTTTTCTTTCACTTTACACATTTTTTTCTATTTCTAATGAT
Sepioteuthis lessoniana genome assembly, chromosome: 8.
OY757911.1:82306935-82306954
TTATTAAATAACTAGAACTAACTCCACTTT82306935TCAGATCCCCTTTTCTTTCATTTTTTTCAGCTCGACGTTGCATGTGCTAT
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:37574514-37574533
AGAGAGAGAGAGCCTTCGATTTGAATGAAA37574514TGAAAGAAAAGGGGATCTGATGGAAAGTAGAAATGGAGTTAGCGAGAGAG
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:58128294-58128313
AGAGAGAGAGAGAATTCGATTTGAATGAAA58128294TGAAAGAAAAGGGGATCTGATGGAAAGTAGAAATGGAGTTAGCGAGAGAG
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:67283143-67283162
AGAGAGAGAGAGCCTTCGATTTGAATGAAA67283143TGAAAGAAAAGGGGATCTGACGGAAAGTAGAAATGGAGTTAGCGAGAGAG
Peptoclostridium acidaminophilum DSM 3953 plasmid EAL2_808p, complete sequence.
CP007453.1:509447-509466
GATGGAAGTGAAGCTCGACCACCTGATATT509447TGAAAGAAAAGGGGATCTGATGGATCCGGAAATAGTTCAGCTTAGCGGGG
Sarcophaga variegata genome assembly, chromosome: 5.
OW026362.1:28086648-28086667
CTTGTTACAAGTAAACCAACAACATCAGTA28086648TGAAAGAAAAGGGGATCTGAACAAAAATGCGCAAACGACAATGAAGTCGC
Terebella lapidaria genome assembly, chromosome: 10.
OX424564.1:19660892-19660911
GATCTTTACATACCATTGATCATCTCAATA19660892TGAAAGAAAAGGGGATCTGAATCTTCGTGGGAGTGCCAATACTTCCATAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAGATCCCCTTTTCTTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAGATCCCCTTTTCTTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.342 | 0.333 | search_plus_done; http://172.18.8.135:50400/match?q=TCAGATCCCCTTTTCTTTCA&k=0&no_gap=0&offset=0&limit=50
0.375 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAAGAAAAGGGGATCTGA&k=0&no_gap=0&offset=0&limit=36
0.379 | 0.004 | cgi_end;

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