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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:22:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BNZB_UP_064_H06_14MAY2004_034 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE560989.1:330-349
TACCAAAGAAAACTCTTTTTCTTGATATAT330TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica rapa subsp. pekinensis clone KBrH133F05, complete sequence.
FP340389.1:24883-24902
TACCAAAGAAAACTCTTTTTCTTGATATAT24883TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19310821-19310840
TACCAAAGAAAACTCTTTTTCTTGATATAT19310821TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica napus genome assembly, chromosome: A08.
HG994362.1:21968815-21968834
TACCAAAGAAAACTCTTTTTCTTGATATAT21968815TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica rapa genome, scaffold: A08.
LR031575.1:20865178-20865197
TACCAAAGAAAACTCTTTTTCTTGATATAT20865178TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:26651064-26651083
TACCAAAGAAAACTCTTTTTCTTGATATAT26651064TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
odd88f05.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH961212.1:427-446
CATCTTCTCCATTGATCTTAAGACAAATGA427TCCAACACCAAACAAGCTGAATATATCAAGAAAAAGAGTTTTCTTTGGTA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:4287989-4288008
CATCTTCTCCATTGATCTTAAGACAAATGA4287989TCCAACACCAAACAAGCTGAATATATCAAGAAAAAGAGTTTTCTTTGGTA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55326656-55326675
CATCTTCTCCATTGATCTTAAGACAAATGA55326656TCCAACACCAAACAAGCTGAATATATCAAGAAAAAGAGTTTTCTTTGGTA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:55986504-55986523
CATCTTCTCCATTGATCTTAAGACAAATGA55986504TCCAACACCAAACAAGCTGAATATATCAAGAAAAAGAGTTTTCTTTGGTA
Lagria hirta genome assembly, chromosome: 7.
OX375801.1:23578480-23578499
CAACAAAACAATCAACATATTATATTACAA23578480TCCAACACCAAACAAGCTGATCATATTCAAAAAACCCAACCTCTACTTGT
Apotomis capreana genome assembly, chromosome: 15.
OX392513.1:14821271-14821290
CCATCGCAAGTTGCCGGAGTTATCCGGATC14821271TCCAACACCAAACAAGCTGAACAAGTTTTCTGCTCGAACAACACGTGTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAGCTTGTTTGGTGTTGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAGCTTGTTTGGTGTTGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.219 | 0.210 | search_plus_done; http://172.18.8.135:50400/match?q=TCAGCTTGTTTGGTGTTGGA&k=0&no_gap=0&offset=0&limit=50
0.299 | 0.080 | search_minus_done; http://172.18.8.135:50400/match?q=TCCAACACCAAACAAGCTGA&k=0&no_gap=0&offset=0&limit=44
0.303 | 0.004 | cgi_end;

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