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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:28:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

AGN_PNL217df1_e10.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG191483.1:652-672
GATTTCTGAATATCCATCTTCACATGCAAA652TCAGTCAACTGCATCACCAGACATGAAGAATGATGACCTGGAGGAAGAATT
TT-15_L14 Samsun trichome library Nicotiana tabacum cDNA, mRNA sequence.
FG636457.1:199-219
GATTTCTGAATATCCATCTTCACATGCTAA199TCAGTCAACTGCATCACCAGACATGAAGAATGATGACCTGGAGGAAGAATT
CHO_OF4066xe09r1.ab1 CHO_OF4 Nicotiana tabacum genomic 3', genomic survey sequence.
FH438916.1:383-403
GATTTCTGAATATCCATCTTCACATGCAAA383TCAGTCAACTGCATCACCAGACATGAAGAATGATGACCTGGAGGAAGAATT
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:164336357-164336377
GATTGCTGATTATCAATCTCCACATGCAAA164336357TCAGTCAACTGCATCACCAGACAATGATGACCTGGATGAACAATTGGATAT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 3.
CP124717.1:85505760-85505780
GATTGCTGAATATCAATCTCCACATGCAAA85505760TCAGTCAACTGCATCACCAGACATGAAGTATGATGACCTGGATGAACAATT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 2.
CP124730.1:165139063-165139083
GATTGCTGATTATCAATCTCCACATGCAAA165139063TCAGTCAACTGCATCACCAGACAATGATGACCTGGATGAACAATTGGATAT
AGN_RNC106xm02r1.ab1 AGN_RNC Nicotiana tabacum cDNA 3', mRNA sequence.
FG153246.1:648-668
AATTCTTCCTCCAGGTCATCATTCTTCATG648TCTGGTGATGCAGTTGACTGATTTGCATGTGAAGATGGATATTCAGAAATC
AGN_PNL217dr1_e10.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 3', mRNA sequence.
FG191574.1:629-649
AATTCTTCCTCCAGGTCATCATTCTTCATG629TCTGGTGATGCAGTTGACTGATTTGCATGTGAAGATGGATATTCAGAAATC
TSA: Capsicum annuum MGMT_Contig4288, mRNA sequence.
JW054532.1:714-734
ATATCCAATTGTTCATCCAGGTCATCATTG714TCTGGTGATGCAGTTGACTGATTTGCATGTGGAGATTGATAATCAGCAATC
CHO_OF4066xe09f1.ab1 CHO_OF4 Nicotiana tabacum genomic 5', genomic survey sequence.
FH438857.1:487-507
AATTCTTCCTCCAGGTCATCATTCTTCATG487TCTGGTGATGCAGTTGACTGATTTTGCATGTGAAGATGGATATTCAGAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAGTCAACTGCATCACCAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAGTCAACTGCATCACCAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.310 | 0.301 | search_plus_done; http://172.18.8.135:50400/match?q=TCAGTCAACTGCATCACCAGA&k=0&no_gap=0&offset=0&limit=50
0.534 | 0.224 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGGTGATGCAGTTGACTGA&k=0&no_gap=0&offset=0&limit=44
0.537 | 0.003 | cgi_end;

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