GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:20:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Theobroma cacao, mRNA sequence (KZ0AAB6YO09FM1).
CU585694.1:47-67
TTGAAATGGCAAATATCGAAATCTACAAGT47TCATAACAACAACGGATTGAGTTACATCACCTAAAATTGGCACCTAAAGAC
Theobroma cacao, mRNA sequence (KZ0AAM7YO16FM1).
CU609126.1:32-52
TTTTTTTTTTTTTTTGCGAAATCCACAAGT32TCATAACAACAACGGATTGAGTTACATCACCTAAAATTGGCACCCAATGAC
Theobroma cacao isolate Sca6 chromosome 1.
CP139290.1:3610018-3610038
TTGAAATGGCAAACATCGAAATCTACAAGT3610018TCATAACAACAACGGATTGAGTTACATCACCTAGAATTGGCACCTAATGAC
Theobroma cacao genome assembly, chromosome: I.
LT594788.1:3624707-3624727
TTGAAATGGCAAATATCGAAATCTACAAGT3624707TCATAACAACAACGGATTGAGTTACATCACCTAGAATTGGCACCTAATGAC
Theobroma cacao genome assembly, chromosome: 1.
OY284438.1:3670606-3670626
TTGAAATGGCAAACATCGAAATCTACAAGT3670606TCATAACAACAACGGATTGAGTTACATCACCTAGAATTGGCACCTAATGAC
Theobroma cacao genome assembly, chromosome: 1.
OY284448.1:3670925-3670945
TTGAAATGGCAAACATCGAAATCTACAAGT3670925TCATAACAACAACGGATTGAGTTACATCACCTAGAATTGGCACCTAATGAC
Theobroma cacao genome assembly, chromosome: 1.
OY284458.1:35572467-35572487
GTCATTAGGTGCCAATTCTAGGTGATGTAA35572467CTCAATCCGTTGTTGTTATGAACTTGTAGATTTCGATGTTTGCCATTTCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCATAACAACAACGGATTGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCATAACAACAACGGATTGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.271 | 0.262 | search_plus_done; http://172.18.8.135:50400/match?q=TCATAACAACAACGGATTGAG&k=0&no_gap=0&offset=0&limit=50
0.313 | 0.042 | search_minus_done; http://172.18.8.135:50400/match?q=CTCAATCCGTTGTTGTTATGA&k=0&no_gap=0&offset=0&limit=44
0.314 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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