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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:03:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rana temporaria genome assembly, chromosome: 1.
LR991680.1:676360968-676360987
ACTCCTCCTTCTTCATTTCCAGCCGTTTGA676360968TCATATCAGACCCTCTCTGCCTGTCCGGAGATCTCACTCAGGACTCTCTT
Rana temporaria genome assembly, chromosome: 3.
LR991682.1:212313861-212313880
ACAAATACATTACGGAATACATAGATCCAT212313861TCATATCAGACCCTCTCTGCTGAAGGCTCAATCTGACCTCTCAATGTGTT
Brassica rapa clone BAC KBrH117M18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC146875.2:66960-66979
TTCTCATGTGTCAAACATAAAATTACACTG66960TCATATCAGACCCTCTCTGCATCTTTTATTTGCTGCATAATACATGTATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005M10, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232442.1:81619-81638
TTCTCATGTGTCAAACATAAAATTACACTG81619TCATATCAGACCCTCTCTGCATCTTTTATTTGCTGCATAATACATGTATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB009G06, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC240986.1:128351-128370
TTCTCATGTGTCAAACATAAAATTACACTG128351TCATATCAGACCCTCTCTGCATCTTTTATTTGCTGCATAATACATGTATA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:1791565-1791584
TTCTCATGTGTCAAACATAAAATTACACTG1791565TCATATCAGACCCTCTCTGCATCTTTTATTTGCTGCATAATACATGTATA
Brassica rapa genome, scaffold: A03.
LR031572.1:1790506-1790525
TTCTCATGTGTCAAACATAAAATTACACTG1790506TCATATCAGACCCTCTCTGCATCTTTTATTTGCTGCATAATACATGTATA
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:1752442-1752461
TTCTCATGTGTCAAACATGAAATTACACTG1752442TCATATCAGACCCTCTCTGCATCTTTTATTTGCCGCATATTACATATCTA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:1791353-1791372
TTCTCATGTGTCAAACATAAAATTACACTG1791353TCATATCAGACCCTCTCTGCATCTTTTATTTGCTGCATAATACATGTATA
Sciurus carolinensis genome assembly, chromosome: 9.
LR738598.1:21668443-21668462
TCAATGAATCTTCCATTCTGCTTTCCAGGA21668443GCAGAGAGGGTCTGATATGACAAGTCCTTAGCCACACGTGTCTAAAAGAT
Brassica rapa subsp. pekinensis clone KBrH133A11, complete sequence.
FP017271.1:32899-32918
TATACATGTATTATGCAGCAAATAAAAGAT32899GCAGAGAGGGTCTGATATGACAGTGTAATTTTATGTTTGACACATGAGAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
AC155342.2:37459-37478
TATACATGTATTATGCAGCAAATAAAAGAT37459GCAGAGAGGGTCTGATATGACAGTGTAATTTTATGTTTGACACATGAGAA
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:33769840-33769859
TAGATATGTAATATGCGGCAAATAAAAGAT33769840GCAGAGAGGGTCTGATATGACAGTGTAATTTCATGTTTGACACATGAGAA
Macrobrachium nipponense isolate FS-2020 chromosome 4.
CP062050.1:86564440-86564459
CCATACTTGGAATCAGCAAAGCTATAATAA86564440GCAGAGAGGGTCTGATATGAGGAGAACGGGAATAAGGTAAAACCTAAGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCATATCAGACCCTCTCTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCATATCAGACCCTCTCTGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.371 | 0.363 | search_plus_done; http://172.18.8.135:50400/match?q=TCATATCAGACCCTCTCTGC&k=0&no_gap=0&offset=0&limit=50
0.472 | 0.100 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGAGAGGGTCTGATATGA&k=0&no_gap=0&offset=0&limit=41
0.476 | 0.004 | cgi_end;

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