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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:22:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum lycopersicum chromosome 6 clone C06HBa0002C17, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.
AC211019.1:39786-39805
CTTTGAATAAACAATCAAGAACCGACCACT39786TCATCACCAAATCTCCATCGGTAACAACAGCCAAACAACCTCTAAACACC
Solanum lycopersicum chromosome 6 clone C06HBa0128E05, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC211052.1:40055-40074
CTTTGAATAAACAATCAAGAACCGACCACT40055TCATCACCAAATCTCCATCGGTAACAACAGCCAAACAACCTCTAAACACC
Geotrypetes seraphini genome assembly, chromosome: 8.
LR699153.1:12376382-12376401
TCAGGCAAAGGTGTCGATAAATAATGGTGG12376382CGATGGAGATTTGGTGATGAGATTGCTGGTGTTCTTGGAAGTGATTTTGC
CNMM14644.b1_G13.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMM14644, mRNA sequence.
EH728194.1:314-333
TGCCGAGACGCTTAGTCGGTTGGGGGTTGC314CGATGGAGATTTGGTGATGATGGTTTCGAATCATTCTTCTTCTTCTTCTT
Solanum melongena mRNA, clone: SmFL06I06, 5'end.
FS070505.1:417-436
TTCTGACAAACTGAGTGCTCTAGGTGTTGG417CGATGGAGATTTGGTGATGATGGTGTCTAATGCAACATCCCTTTCTAGTG
Solanum melongena mRNA, clone: SmFL15M08, 5'end.
FS076882.1:450-469
TTCTGACAAACTGAGTGCTCTAGGTGTTGG450CGATGGAGATTTGGTGATGATGGTGTCTAATGCAACATCCCTTTCTAGTG
Solanum torvum mRNA, clone: TVR19J02, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS115785.1:508-527
TTCTGACAAACTGAGTGCTCTAGGTGTTGG508CGATGGAGATTTGGTGATGATGGTGTCTAGTGCAACGTCCCTTTCTA
Solanum lycopersicum chromosome 6 clone C06HBa0023D12, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.
AC211025.1:43853-43872
GGTGTTTAGAGGTTGTTTGGCTGTTGTTAC43853CGATGGAGATTTGGTGATGAAGTGGTCGGTTCTTGATTGTTTATTCAAAG
Solanum lycopersicum Micro-Tom DNA, chromosome 6, draft genome sequence.
AP028940.1:46174791-46174810
GGTGTTTAGAGGTTGTTTGGCTGTTGTTAC46174791CGATGGAGATTTGGTGATGAAGTGGTCGGTTCTTGATTGTTTATTCAAAG
Solanum lycopersicum cultivar I-3 chromosome 6.
CP023762.1:43708143-43708162
GGTGTTTAGAGGTTGTTTGGCTGTTGTTAC43708143CGATGGAGATTTGGTGATGAAGTGGTCGGTTCTTGATTGTTTATTCAAAG
Solanum lycopersicum chromosome ch06, complete genome.
HG975518.1:40097636-40097655
GGTGTTTAGAGGTTGTTTGGCTGTTGTTAC40097636CGATGGAGATTTGGTGATGAAGTGGTCGGTTCTTGATTGTTTATTCAAAG
Avena sativa genome assembly, chromosome: 5D.
OU342396.1:33294620-33294639
TCACTCATGGATGAGGGAAACATTGATGGT33294620CGATGGAGATTTGGTGATGAAGATGATGATGATCCTCTCCAAATTCCTCG
Solanum lycopersicum genome assembly, chromosome: 6.
OU640349.1:46190392-46190411
GGTGTTTAGAGGTTGTTTGGCTGTTGTTAC46190392CGATGGAGATTTGGTGATGAAGTGGTCGGTTCTTGATTGTTTATTCAAAG
Avena sativa genome assembly, chromosome: 19.
OV702297.1:31171198-31171217
TCACTCATGGATGAGGGAAACATTGATGGT31171198CGATGGAGATTTGGTGATGAAGATGATGATGATCCTCTCCAAATTCCTCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCATCACCAAATCTCCATCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCATCACCAAATCTCCATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.168 | 0.160 | search_plus_done; http://172.18.8.135:50400/match?q=TCATCACCAAATCTCCATCG&k=0&no_gap=0&offset=0&limit=50
0.696 | 0.527 | search_minus_done; http://172.18.8.135:50400/match?q=CGATGGAGATTTGGTGATGA&k=0&no_gap=0&offset=0&limit=48
0.703 | 0.008 | cgi_end;

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