GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 17:58:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GQ02819.SP6_G13 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02819_G13 3', mRNA sequence.
EX322940.1:491-510
AATAAGGCTTCATCGTCTAGTTCAAGCACC491TCATCCAATTTTTCATAGTCATATTCACCACCACTCTGATATTGAATGTC
GQ0191.TB_M21 GQ019: Clean ROOTS systems - P treatments Picea glauca cDNA clone GQ0191_M21 3', mRNA sequence.
GE479090.1:638-657
AATAAGGCTTCATCGTCTAGTTCAAGCACC638TCATCCAATTTTTCATAGTCATATTCACCACCACTCTGATATTGAATGTC
Coremacera marginata genome assembly, chromosome: 1.
OU612043.1:76176398-76176417
GTAAGGTAGGCGAGGTTTTCATCCAATTTT76176398TCATCCAATTTTTCATAGTCAGGATTTATATTGATGATCAAAGCTTAAGT
Hipparchia semele genome assembly, chromosome: 25.
OW121733.1:4118232-4118251
TAAAGTCATAATGGTTATGACTTTGACCAG4118232TCATCCAATTTTTCATAGTCGGATTATAGTTTTCAAACTTATTCCTTGTC
Micromys minutus genome assembly, chromosome: 4.
OZ004784.1:80864718-80864737
ATAAATTTGTGTTGAGGAATAGTTACGATT80864718GACTATGAAAAATTGGATGATAGTCCTCAACAGTGAGTTCAAAGAACCAT
GQ02819.B7_G13 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02819_G13 5', mRNA sequence.
EX322580.1:474-493
GACATTCAATATCAGAGTGGTGGTGAATAT474GACTATGAAAAATTGGATGAGGTGCTTGAACTAGACGATGAAGCCTTATT
WS0478.CR_O01 SS-BD-32 Picea sitchensis cDNA clone WS0478_O01 3', mRNA sequence.
GT127289.1:107-126
GACATTCAATATCAGAGTGGTGGTGAATAT107GACTATGAAAAATTGGATGAGGTGCTTGAACTAGACGATGAAGCCTTATT
Picea glauca clone GQ02819_G13 mRNA sequence.
BT105177.1:474-493
GACATTCAATATCAGAGTGGTGGTGAATAT474GACTATGAAAAATTGGATGAGGTGCTTGAACTAGACGATGAAGCCTTATT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 11.
CP124709.1:75233246-75233265
CGAGGGACTCCGGTCACTTTACGGAAGAAC75233246GACTATGAAAAATTGGATGACTATGAGCAGGACGATTGAATGGATGGGGT
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:1192049656-1192049675
TGATCCAACCAAGATATGATACCTCATTAA1192049656GACTATGAAAAATTGGATGATACAACACCCTCTATATATGTTAGGCCAGG
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:1325383361-1325383380
AGCTGTTTGAATAAGAAGTTTCCGAATAAA1325383361GACTATGAAAAATTGGATGAATAATGGAATTGAATTTAATAACACTACAC
Platycnemis pennipes genome assembly, chromosome: 1.
OW121847.1:46801666-46801685
CATAGTGGTGGAGGTTTATATGCCATGACA46801666GACTATGAAAAATTGGATGAGGTCTATGAAGATATCACAGAAGTAATATT
Maratus speciosus genome assembly, chromosome: 10.
OZ010797.1:92699076-92699095
ACATTTTAATTGCCATTCCAGACTTTCTCA92699076GACTATGAAAAATTGGATGACCATTAGAACATCAATCATCAAAATACTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCATCCAATTTTTCATAGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCATCCAATTTTTCATAGTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.409 | 0.400 | search_plus_done; http://172.18.8.135:50400/match?q=TCATCCAATTTTTCATAGTC&k=0&no_gap=0&offset=0&limit=50
0.655 | 0.247 | search_minus_done; http://172.18.8.135:50400/match?q=GACTATGAAAAATTGGATGA&k=0&no_gap=0&offset=0&limit=46
0.661 | 0.006 | cgi_end;

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