GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:57:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CL__Eb0001G12.r CL__Eb Curcuma longa cDNA clone CL__Eb0001G12 3', mRNA sequence.
DY388710.1:59-78
CTTCACATCTTCCCGGTGTTTCGATTGCAA59TCATGGGTTGCATTGTGAACGGGCCAGGCGAGATGGCGGATGCAGATTTC
CL__Eb0008A03.r CL__Eb Curcuma longa cDNA clone CL__Eb0008A03 3', mRNA sequence.
DY393206.1:66-85
CTTCACATCTTCCCGGTGTTTCGATTGCAA66TCATGGGTTGCATTGTGAACGGGCCAGGCGAGATGGCGGATGCAGATTTC
CL__Eb0010A17.r CL__Eb Curcuma longa cDNA clone CL__Eb0010A17 3', mRNA sequence.
DY394656.1:69-88
CTTCTCATCCCTTTAGTGTTTCGATTGCAA69TCATGGGTTGCATTGTGAACTGGCCAGGCGAGATGGCGGATGCAGATTTC
CL__Eb0010L13.r CL__Eb Curcuma longa cDNA clone CL__Eb0010L13 3', mRNA sequence.
DY395120.1:70-89
CTTCACATCTCCTCGGTGTTTCGATTGCAA70TCATGGGTTGCATTGTGAACCTGCCAGGCGAGATGGCGGATGCAGATTTC
Solanum melongena mRNA, clone: OVS03H19, 5'end, expressed in ovary at 5d pre-anthesis.
FS031126.1:296-315
CGTCACATCTGCCTGGCGTTTCAATTGCCA296TCATGGGTTGCATTGTGAACGGACCTGGGGAGATGGCTGACGCTGACTTT
Solanum melongena mRNA, clone: SEP01A06, 5'end, expressed in sepal at 10d after anthesis.
FS058147.1:187-206
CGTCACATCTGCCTGGCGTTTCAATTGCCA187TCATGGGTTGCATTGTGAACGGACCTGGGGAGATGGCTGACGCTGACTTT
CCII5028.b1 CCII Mimulus nasutus SF floral buds (H) Erythranthe nasuta cDNA clone CCII5028 5', mRNA sequence.
GO950484.1:462-481
CGTCTCATTTGCCTGGTGTTTCAATTGCTA462TCATGGGTTGCATTGTGAACGGACCTGGAGAAATGGCTGATGCTGATTTT
CCBG7075.b1 CCBG Mimulus guttatus IM62 floral buds (H+L) Erythranthe guttata cDNA clone CCBG7075 5', mRNA sequence.
GR115679.1:181-200
CGTCTCATTTGCCTGGTGTTTCAATTGCTA181TCATGGGTTGCATTGTGAACGGACCTGGAGAAATGGCTGATGCTGATTTT
CBPG1637.b1 CBPG Mimulus guttatus IM62 roots, seedlings, fruits, callus (L) Erythranthe guttata cDNA clone CBPG1637 5', mRNA sequence.
GR170134.1:373-392
CGTCTCATTTGCCTGGTGTTTCAATTGCTA373TCATGGGTTGCATTGTGAACGGACCTGGAGAAATGGCTGATGCTGATTTT
penium_71836_c6618_c Penium margaritaceum EST library Penium margaritaceum cDNA 5', mRNA sequence.
HO603734.1:211-230
CCTCGCACCTACCTGGCGTCGCTATCGCCA211TCATGGGTTGCATTGTGAACGGACCGGGTGAGATGGCGGACGCCGACTTT
penium_71836_c2610_c Penium margaritaceum EST library Penium margaritaceum cDNA 5', mRNA sequence.
HO604289.1:1176-1195
CCTCGCACCTACCTGGCGTCGCTATCGCCA1176TCATGGGTTGCATTGTGAACGGACCGGGTGAGATGGCGGACGCTGACTTT
TSA: Penium margaritaceum pmar_71836_c2610_c mRNA sequence.
JO210715.1:1176-1195
CCTCGCACCTACCTGGCGTCGCTATCGCCA1176TCATGGGTTGCATTGTGAACGGACCGGGTGAGATGGCGGACGCTGACTTT
TSA: Penium margaritaceum pmar_71836_c6618_c mRNA sequence.
JO213068.1:211-230
CCTCGCACCTACCTGGCGTCGCTATCGCCA211TCATGGGTTGCATTGTGAACGGACCGGGTGAGATGGCGGACGCCGACTTT
Osmanthus fragrans 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS) mRNA, complete cds.
KX400847.1:2154-2173
CATCCCATTTGCCTGGTGTTTCGATCGCAA2154TCATGGGTTGCATTGTGAACGGCCCAGGAGAGATGGCTGATGCAGATTTT
Andrographis paniculata 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase mRNA, complete cds.
MK503969.1:2030-2049
CTTCTCACTTGCCCGGAGTTTCGATTGCCA2030TCATGGGTTGCATTGTGAACGGGCCCGGAGAAATGGCGGATGCAGACTTT
Andrographis alata 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase (HDS) mRNA, complete cds.
ON049366.1:2219-2238
CATCTCATTTACCCGGCGTTTCGATCGCCA2219TCATGGGTTGCATTGTGAACGGGCCAGGAGAAATGGCAGATGCAGATTTC
Fraxinus pennsylvanica genome assembly, chromosome: 5.
OU503040.1:25935758-25935777
TCAAATCTTCTTTTCCTATGCAGATCGCAA25935758TCATGGGTTGCATTGTGAACGGCCCAGGAGAAATGGCTGATGCAGATTTT
Fraxinus pennsylvanica genome assembly, chromosome: 16.
OU503051.1:3712481-3712500
TCATATCTTCTTTTCCCATGTAGATCGCAA3712481TCATGGGTTGCATTGTGAACGGCCCAGGAGAAATGGCTGATGCAGATTTT
Cochlearia excelsa genome assembly, chromosome: 2.
OY748328.1:8060276-8060295
GAGACTTTGAATAAACGGCGCAGATCGCGA8060276TCATGGGTTGCATTGTGAACGGACCAGGAGAAATGGCAGATGCTGACTTC
Ulota crispa genome assembly, chromosome: 2.
OY987243.1:35146510-35146529
GCTACGTCGTTATCTTTTCGCAGATTGCAA35146510TCATGGGTTGCATTGTGAACGGTCCTGGAGAAATGGCAGATGCTGACTTT
CL__Eb0001G12.f CL__Eb Curcuma longa cDNA clone CL__Eb0001G12 5', mRNA sequence.
DY388709.1:400-419
GAAATCTGCATCCGCCATCTCGCCTGGCCC400GTTCACAATGCAACCCATGATTGCAATCGAAACACCGGGAAGATGTGAAG
CL__Eb0008A03.f CL__Eb Curcuma longa cDNA clone CL__Eb0008A03 5', mRNA sequence.
DY393205.1:400-419
GAAATCTGCATCCGCCATCTCGCCTGGCCC400GTTCACAATGCAACCCATGATTGCAATCGAAACACCGGGAAGATGTGAAG
CL__Eb0010A17.f CL__Eb Curcuma longa cDNA clone CL__Eb0010A17 5', mRNA sequence.
DY394655.1:382-401
GAAATCTGCATCCGCCATCTCGCCTGGCCC382GTTCACAATGCAACCCATGATTGCAATCGAAACACCGGGAAGATGTGAAG
CL__Eb0010L13.f CL__Eb Curcuma longa cDNA clone CL__Eb0010L13 5', mRNA sequence.
DY395119.1:392-411
GAAATCTGCATCCGCCATCTCGCCTGGCCC392GTTCACAATGCAACCCATGATTGCAATCGAAACACCGGGAAGATGTGAAG
Solanum melongena mRNA, clone: OVS03H19, 3'end, expressed in ovary at 5d pre-anthesis.
FS031127.1:480-499
AAAGTCAGCGTCAGCCATCTCCCCAGGTCC480GTTCACAATGCAACCCATGATGGCAATTGAAACGCCAGGCAGATGTGACG
Solanum melongena mRNA, clone: SEP01A06, 3'end, expressed in sepal at 10d after anthesis.
FS058148.1:392-411
AAAGTCAGCGTCAGCCATCTCCCCAGGTCC392GTTCACAATGCAACCCATGATGGCAATTGAAACGCCAGGCAGATGTGACG
Solanum melongena mRNA, clone: SmFL16A16, 3'end.
FS077083.1:468-487
AAAGTCAGCGTCAGCCATCTCCCCAGGTCC468GTTCACAATGCAACCCATGATGGCAATTGAAACGCCAGGCAGATGTGACG
CCII1920.g1 CCII Mimulus nasutus SF floral buds (H) Erythranthe nasuta cDNA clone CCII1920 3', mRNA sequence.
GO945586.1:271-290
AAAATCAGCATCAGCCATTTCTCCAGGTCC271GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCII2130.g1 CCII Mimulus nasutus SF floral buds (H) Erythranthe nasuta cDNA clone CCII2130 3', mRNA sequence.
GO945970.1:385-404
AAAATCAGCATCAGCCATTTCTCCAGGTCC385GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCII2799.g1 CCII Mimulus nasutus SF floral buds (H) Erythranthe nasuta cDNA clone CCII2799 3', mRNA sequence.
GO946499.1:271-290
AAAATCAGCATCAGCCATTTCTCCAGGTCC271GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCII5028.g1 CCII Mimulus nasutus SF floral buds (H) Erythranthe nasuta cDNA clone CCII5028 3', mRNA sequence.
GO950485.1:271-290
AAAATCAGCATCAGCCATTTCTCCAGGTCC271GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCII5456.g1 CCII Mimulus nasutus SF floral buds (H) Erythranthe nasuta cDNA clone CCII5456 3', mRNA sequence.
GO951271.1:391-410
AAAATCAGCATCAGCCATTTCTCCAGGTCC391GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCII8977.g1 CCII Mimulus nasutus SF floral buds (H) Erythranthe nasuta cDNA clone CCII8977 3', mRNA sequence.
GO957675.1:123-142
AAAATCAGCATCAGCCATTTCTCCAGGTCC123GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCII9136.g1 CCII Mimulus nasutus SF floral buds (H) Erythranthe nasuta cDNA clone CCII9136 3', mRNA sequence.
GO957956.1:201-220
AAAATCAGCATCAGCCATTTCTCCAGGTCC201GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGGAAATGAGACG
CCIF24789.g1 CCIF Mimulus guttatus IM62 leaves (H) Erythranthe guttata cDNA clone CCIF24789 3', mRNA sequence.
GR099510.1:393-412
AAAATCAGCATCAGCCATTTCTCCAGGTCC393GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCBG6498.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Erythranthe guttata cDNA clone CCBG6498 3', mRNA sequence.
GR114563.1:332-351
AAAATCAGCATCAGCCATTTCTCCAGGTCC332GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCBG7075.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Erythranthe guttata cDNA clone CCBG7075 3', mRNA sequence.
GR115680.1:393-412
AAAATCAGCATCAGCCATTTCTCCAGGTCC393GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CCBG12311.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Erythranthe guttata cDNA clone CCBG12311 3', mRNA sequence.
GR124415.1:393-412
AAAATCAGCATCAGCCATTTCTCCAGGTCC393GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CBPF12034.g1 CBPF Mimulus guttatus IM62 roots, seedlings, fruits, callus (H) Erythranthe guttata cDNA clone CBPF12034 3', mRNA sequence.
GR166940.1:370-389
AAAATCAGCATCAGCCATTTCTCCAGGTCC370GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CBPF12882.b1 CBPF Mimulus guttatus IM62 roots, seedlings, fruits, callus (H) Erythranthe guttata cDNA clone CBPF12882 5', mRNA sequence.
GR168338.1:379-398
AAAATCAGCATCAGCCATTTCTCCAGGTCC379GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAGACG
CBPG1637.g1 CBPG Mimulus guttatus IM62 roots, seedlings, fruits, callus (L) Erythranthe guttata cDNA clone CBPG1637 3', mRNA sequence.
GR170135.1:437-456
AAAATCAGCATCAGCCATTTCTCCAGGTCC437GTTCACAATGCAACCCATGATAGCAATTGAAACACCAGGCAAATGAAACG
Chionographis japonica genome assembly, chromosome: 11.
OX393559.1:67538890-67538909
AAAATCCGCATCAGCCATCTCCCCGGGCCC67538890GTTCACAATGCAACCCATGATTGCAATCTGAGAAAGAAAAGAGGGGTTCA
Linaria vulgaris genome assembly, chromosome: 3.
OX415251.1:55731240-55731259
AAAATCTGCATCAGCCATCTCTCCTGGCCC55731240GTTCACAATGCAACCCATGATTGCAATCTGTAACCACCACTCAGAAAACA
Hordeum vulgare genome assembly, chromosome: 3H.
OX460133.1:394189790-394189809
ACCATAGTAGAAAGATAAGCGGTGAACCCA394189790GTTCACAATGCAACCCATGAGCGCACTCTTGGTGACCCCTTTGCCTATAA
Ulota crispa genome assembly, chromosome: 1.
OY987242.1:13125904-13125923
AAAGTCAGCGTCCGCCATTTCTCCAGGGCC13125904GTTCACAATGCAACCCATGATAGCAATCTGCGAAAGTAGAAAACGTTACA
Erodium maritimum genome assembly, chromosome: 3.
OY997590.1:11969007-11969026
AAAATCTGCATCAGCCATCTCCCCGGGCCC11969007GTTCACAATGCAACCCATGATTGCAATCTAAGATAGAAATTGAGAGAGAA
Wolbachia endosymbiont of Dirofilaria (Dirofilaria) immitis strain FR3 chromosome, complete genome.
CP046578.1:363535-363554
TAAATTAGCATATTTACTTTCTCCAGGGCC363535GTTCACAATGCAACCCATGACAGCAATATTCATATGTTCTACACCTGGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCATGGGTTGCATTGTGAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCATGGGTTGCATTGTGAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.819 | 0.811 | search_plus_done; http://172.18.8.135:50400/match?q=TCATGGGTTGCATTGTGAAC&k=0&no_gap=0&offset=0&limit=50
2.570 | 1.751 | search_minus_done; http://172.18.8.135:50400/match?q=GTTCACAATGCAACCCATGA&k=0&no_gap=0&offset=0&limit=30
2.588 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).