GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 13:43:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2465879-2465899
TTTTTTTCCAAATTGATCTAGTATTCTAGC2465879TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATATGA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2424498-2424518
TTTTTTTCCAAATTGATCTAGTATTCTAGC2424498TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATATAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2523787-2523807
TTTTTTTCCAAATTGATCTAGTATTCTAGC2523787TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATATGA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2620867-2620887
TTTTTTTCCAAAATGATCTAGTATTCTAGC2620867TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATGATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2463274-2463294
TTTTTTTCCAAATTGATCTAGTATTCTAGC2463274TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATATAT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2490541-2490561
TTTTTTTCCAAATTGATCTAGTATTCTAGC2490541TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATGATCTA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2578831-2578851
TTTTTTTCCAAATTGATCTAGTATTCTAGC2578831TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATATAT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2572014-2572034
TTTTTTTCCAAATTGATCTAGTATTCTAGC2572014TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATATAT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2622461-2622481
TTTTTTTCCAAATTGATCTAGTATTCTAGC2622461TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATGATC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2662409-2662429
TTTTTTTCCAAATTGATCTAGTATTCTAGC2662409TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATGATC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2642799-2642819
TTTTTTTCCAAATTGATCTAGTATTCTAGC2642799TCATGTTATGTGCTTGCTTGCATGTATAATTGCATATATATATATATATAT
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38500948-38500968
ATATATATGTGTGCGCGCGTAATTATACAT38500948GCAAGCAAGCACATAACATGAGCTAGAATACTAGATCAATTTGGAAAAAAA
Hesperia comma genome assembly, chromosome: 8.
FR990021.1:12377998-12378018
AGTCTATTTGATTTTAAGAGTACAAGGAGT12377998GCAAGCAAGCACATAACATGACGACAATAAAATTGCCACATAACTACAATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCATGTTATGTGCTTGCTTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCATGTTATGTGCTTGCTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=TCATGTTATGTGCTTGCTTGC&k=0&no_gap=0&offset=0&limit=50
0.144 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAGCAAGCACATAACATGA&k=0&no_gap=0&offset=0&limit=39
0.146 | 0.001 | cgi_end;

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