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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:27:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus chromosome 19, clone RP23-308C2, complete sequence.
AC107844.11:173880-173899
GTCATTTTGAGGGATAAATGTTCTTTTGCA173880TCATTCTTTTGCGCTTCCTTGCTAATATACAGACATAGCAAATTGCGCAT
Onychomys torridus genome assembly, chromosome: 3.
LR877190.1:102239812-102239831
CTCCACGCTCCCCGCGGGCTGCCTTTGAGT102239812TCATTCTTTTGCGCTTCCTTTCAATTTCACCTCAAGATAGGAACACAAGG
Onychomys arenicola genome assembly, chromosome: 3.
OX460349.1:105211083-105211102
CTCCACGCTCCACGAGGGCTGCCTGAGAGT105211083TCATTCTTTTGCGCTTCCTTTCAATTTCACCTCAAGATGGGAACACAAGG
Onychomys leucogaster genome assembly, chromosome: 3.
OX460373.1:105869405-105869424
CTCCACGCTCCACACAGGCTGCCTTTGAGT105869405TCATTCTTTTGCGCTTCCTTTCAATTTCACCTCAAGATGGGAATACAAGG
Onychomys leucogaster genome assembly, chromosome: 3.
OX460420.1:106440538-106440557
CTCCACGCTCCACACAGGCTGCCTTTGAGT106440538TCATTCTTTTGCGCTTCCTTTCAATTTCACCTCAAGATGGGAATACAAGG
Onychomys arenicola genome assembly, chromosome: 3.
OX460444.1:101770464-101770483
CTCCACGCTCCACGAGGGCTGCCTGAGAGT101770464TCATTCTTTTGCGCTTCCTTTCAATTTCACCTCAAGATGGGAACACAAAG
Onychomys torridus genome assembly, chromosome: 3.
OX460884.1:102239812-102239831
CTCCACGCTCCCCGCGGGCTGCCTTTGAGT102239812TCATTCTTTTGCGCTTCCTTTCAATTTCACCTCAAGATAGGAACACAAGG
TSA: Capsicum annuum MGMT_Contig16774, mRNA sequence.
JW067018.1:540-559
TTGATCTTCTTGCTGATTCCCTGTTCGATA540TCATTCTTTTGCGCTTCCTTTGATCCATTAGTTGTTGTAGATCCTCTGAC
TSA: Capsicum annuum CM334_CLC_21192, mRNA sequence.
JW113659.1:519-538
TTGATCTTCTTGCTGATTCCCTGTTCGATA519TCATTCTTTTGCGCTTCCTTTGATCCATTAGTTGTTGTAGATCCTCTGAC
Zea mays cultivar B73 chromosome 5 clone CH201-412J5, *** SEQUENCING IN PROGRESS ***, 34 unordered pieces.
AC195685.5:75844-75863
ATTACCTACATGACTTCATTGATCTTCTCG75844TCATTCTTTTGCGCTTCCTTGATTTCCCGTTCTAAAGTAGGTTCTAACTC
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:161280262-161280281
TTGATCTTCTTGCTGATTCCCTGTTCGATA161280262TCATTCTTTTGCGCTTCCTTTGATCCATTAGTTGTTGTAGATCCTCTGAC
Zea mays cultivar LT2357 chromosome 5.
CP116743.1:84429255-84429274
ATCAGGCGCCGGATCTCACTGATCTTCTCA84429255TCATTCTTTTGCGCTTCCTTGATTTCCCGCTCCAGGGTAGGTTCCAATTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 2.
CP124730.1:162084265-162084284
TTGATCTTCTTGCTGATTCCCTGTTCGATA162084265TCATTCTTTTGCGCTTCCTTTGATCCATTAGTTGTTGTAGATCCTCTGAC
Zea mays genome assembly, chromosome: 5.
LR897971.1:142100334-142100353
ATTACCTACATGACTTCATTGATCTTCTCG142100334TCATTCTTTTGCGCTTCCTTGATTTCCCGTTCTAAAGTAGGTTCTAACTC
Sambucus nigra genome assembly, chromosome: 3.
OX422209.1:673657194-673657213
CATGGTTAGAACTACCTACTTACATTCTTG673657194TCATTCTTTTGCGCTTCCTTTTACCGAGGAAACCTAAAGACCAACCCCGA
Mus musculus BAC clone RP24-492I6 from chromosome 19, complete sequence.
AC125173.3:82677-82696
ATGCGCAATTTGCTATGTCTGTATATTAGC82677AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971561.1:46055013-46055032
ATGCGCAATTTGCTATGTCTGTATATTAGC46055013AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971592.1:46062160-46062179
ATGCGCAATTTGCTATGTCTGTATATTAGC46062160AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971613.1:45993068-45993087
ATGCGCAATTTGCTATGTCTGTATATTAGC45993068AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus domesticus genome assembly, chromosome: 19.
OW971623.1:45416775-45416794
ATGCGCAATTTGCTATGTCTGTATATTAGC45416775AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971655.1:46449486-46449505
ATGCGCAATTTGCTATGTCTGTATATTAGC46449486AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus molossinus genome assembly, chromosome: 19.
OW971676.1:46759617-46759636
ATGCGCAATTTGCTATGTCTGTATATTAGC46759617AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971709.1:45477069-45477088
ATGCGCAATTTGCTATGTCTGTATATTAGC45477069AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971739.1:46061900-46061919
ATGCGCAATTTGCTATGTCTGTATATTAGC46061900AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971760.1:46199924-46199943
ATGCGCAATTTGCTATGTCTGTATATTAGC46199924AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus musculus genome assembly, chromosome: 19.
OW971781.1:45851651-45851670
ATGCGCAATTTGCTATGTCTGTATATTAGC45851651AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971802.1:45931240-45931259
ATGCGCAATTTGCTATGTCTGTATATTAGC45931240AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971823.1:46575708-46575727
ATGCGCAATTTGCTATGTCTGTATATTAGC46575708AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OW971854.1:45982685-45982704
ATGCGCAATTTGCTATGTCTGTATATTAGC45982685AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OX389813.1:50913904-50913923
ATGCGCAATTTGCTATGTCTGTATATTAGC50913904AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OX390162.1:47338514-47338533
ATGCGCAATTTGCTATGTCTGTATATTAGC47338514AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Mus musculus genome assembly, chromosome: 19.
OX439033.1:47449879-47449898
ATGCGCAATTTGCTATGTCTGTATATTAGC47449879AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Tuber melanosporum mRNA 5-prime sequence from clone SY0AAB11YL23 (SY0AAB11YL23FM1).
FP416520.1:471-490
AGTCGGTTGCCATCATGGTAATGAAACCTA471AAGGAAGCGCAAAAGAATGAAGTGTGAGGGTGGAATCACGATAGACGATA
Tuber melanosporum mRNA 5-prime sequence from clone SY0AAD33YF23 (SY0AAD33YF23FM1).
FP454819.1:594-613
AGTCGGTTGCCATCATGGTAATGAAACCTA594AAGGAAGCGCAAAAGAATGAAGTGTGAGGGTGGAATCACGATAGACGATA
KS24039A06 KS24 Capsicum annuum cDNA, mRNA sequence.
GD121462.1:502-521
GTCAGAGGATCTACAACAACTAATGGATCA502AAGGAAGCGCAAAAGAATGATATCGAACAGGGAATCAGCAAGAAGATCAA
TSA: Capsicum annuum MA_MegaContig_30843, mRNA sequence.
JW160338.1:573-592
GTCAGAGGATCTACAACAACTAATGGATCA573AAGGAAGCGCAAAAGAATGATATCGAACAGGGAATCAGCAAGAAGATCAA
2M0159I24R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0159I24 R, genomic survey sequence.
AZ855747.1:191-210
ATGCGCAATTTGCTATGTCTGTATATTAGC191AAGGAAGCGCAAAAGAATGATGCAAAAGAACATTTATCCCTCAAAATGAC
Zea mays cultivar B73 chromosome 5 clone CH201-156P17, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.
AC207274.5:80919-80938
GAATTGGAACCTACCCTGGAGCGGGAAATC80919AAGGAAGCGCAAAAGAATGATGAGAAGATCAGTGAGATCCGGCGCCTGAT
Zea mays genome assembly, chromosome: 5.
LR897971.1:138333272-138333291
GAATTGGAACCTACCCTGGAGCGGGAAATC138333272AAGGAAGCGCAAAAGAATGATGAGAAGATCAGTGAGATCCGGCGCCTGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCATTCTTTTGCGCTTCCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCATTCTTTTGCGCTTCCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.193 | 0.184 | search_plus_done; http://172.18.8.135:50400/match?q=TCATTCTTTTGCGCTTCCTT&k=0&no_gap=0&offset=0&limit=50
0.516 | 0.323 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGAAGCGCAAAAGAATGA&k=0&no_gap=0&offset=0&limit=35
0.532 | 0.016 | cgi_end;

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