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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:12:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ctsc1m1 Tomato Seed Library [C] Solanum lycopersicum cDNA clone cTSC-1-M1 5', mRNA sequence.
GO374020.1:316-338
GGGAGAAACATCAGCACATGCTTTCATATA316TCATTTCCAGCCAAGCTATTTACAGGCTGTAGAAAAACACAAAACGAATCTTT
Solanum tuberosum chromosome 7 clone RHPOTKEY162E09, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC240330.1:53456-53478
GGGAGAAACATCAGCACATGCTTTCATATA53456TCATTTCCAGCCAAGCTATTTACAGGGTGTAGAACAACACACAAGGAATCATT
Solanum lycopersicum Micro-Tom DNA, chromosome 7, draft genome sequence.
AP028941.1:66551830-66551852
GGGAGAAACATCAGCACATGCTTTCATATA66551830TCATTTCCAGCCAAGCTATTTACAGGCTGTAGAAAAACACAAAACGAATCTTT
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:64067001-64067023
GGGAGAAACATCAGCACATGCTTTCATATA64067001TCATTTCCAGCCAAGCTATTTACAGGCTGTAGAAAAACACAAAACGAATCTTT
Solanum pennellii chromosome ch07, complete genome.
HG975446.1:75142581-75142603
GGGAGAAACATCAGCACATGCTTTCATATA75142581TCATTTCCAGCCAAGCTATTTACAGGCTGTAGAAAAACACAAAAGGAATCTTT
Solanum lycopersicum chromosome ch07, complete genome.
HG975519.1:61390556-61390578
GGGAGAAACATCAGCACATGCTTTCATATA61390556TCATTTCCAGCCAAGCTATTTACAGGCTGTAGAAAAACACAAAACGAATCTTT
Solanum lycopersicum genome assembly, chromosome: 7.
OU640350.1:65020980-65021002
GGGAGAAACATCAGCACATGCTTTCATATA65020980TCATTTCCAGCCAAGCTATTTACAGGCTGTAGAAAAACACAAAACGAATCTTT
24867.1 Developing Tubers Solanum tuberosum cDNA clone 24867 5', mRNA sequence.
CV476181.1:24-46
CTTGTGTGTTGTTCTACACCCTG24GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCCC
SV6_20D07_CZ10re_068 SV6 Solanum chacoense cDNA, mRNA sequence.
DN979875.1:532-554
AATGATTCCTTGTGTGTTGTTCTACATCCT532GTAAATAGCTTGGCTGGAAATGATATATGAAAGCTTGTGCTGATGTTTCTCCC
S_T3_226_G03_20APRIL2006_019.1 LIPTS Solanum tuberosum cDNA clone S_T3_226_G03_20APRIL2006_019, mRNA sequence.
JG700002.1:546-568
AATGATTCCTTGTGTGTTGTTCTACACCCT546GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCTC
POTL955TF Solanum tuberosum RHPOTKEY BAC ends Solanum tuberosum genomic clone RHPOTKEY102_I14, genomic survey sequence.
ER791218.1:771-793
AATGATTCCTTGTGTGTTGTTCTACACCCT771GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTG
Solanum tuberosum chromosome 7 clone RHPOTKEY162E09, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC240330.1:28328-28350
AATGATTTCTTGTGTGTTGTTCTACACCCT28328GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCCC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:51263136-51263158
AATGATTCCTTGTGTGTTGTTCTACACCCT51263136GTAAATAGCTTGGCTGGAAATGATATAKGAAAGCATGTGCTGATGTTTYTCCC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:51280486-51280508
AATGATTCCTTGTGTGTTGTTCTACACCCT51280486GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCCC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:51263988-51264010
AATGATTCCTTGTRTGTTGTTCTACACCCT51263988GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCCC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:51281338-51281360
AATGATTCCTTGTGTGTTGTTCTACACCCT51281338GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCCC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:51250132-51250154
AATGATTCCTTGTGTGTTGTTCTACACCCT51250132GTAAATAGCTTGGCTGGAAATGATATAGGAAAGCATGTGCTGATGTTTTTCCC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:51267482-51267504
AATGATTCCTTGTGTGTTGTTCTACACCCT51267482GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCCC
Solanum tuberosum cultivar Solyntus chromosome 7.
CP055240.1:35016991-35017013
AATGATTCCTTGTGTGTTGTTCTACACCCT35016991GTAAATAGCTTGGCTGGAAATGATATATGAAAGCTTGTGCTGATGTTTCTCCC
Solanum tuberosum cultivar Solyntus chromosome 7.
CP055240.1:35178895-35178917
AATGATTCCTTGTGTGTTGTTCTACACCCT35178895GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCCC
Solanum verrucosum cultivar 11H23 chromosome 7.
CP133618.1:45306604-45306626
AATGATTCCTTGTGTGTTGTTCTACACCCT45306604GTAAATAGCTTGGCTGGAAATGATATATGAAAGCATGTGCTGATGTTTCTCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCATTTCCAGCCAAGCTATTTAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCATTTCCAGCCAAGCTATTTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.261 | 0.252 | search_plus_done; http://172.18.8.135:50400/match?q=TCATTTCCAGCCAAGCTATTTAC&k=0&no_gap=0&offset=0&limit=50
0.587 | 0.327 | search_minus_done; http://172.18.8.135:50400/match?q=GTAAATAGCTTGGCTGGAAATGA&k=0&no_gap=0&offset=0&limit=43
0.596 | 0.009 | cgi_end;

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