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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:15:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:8968824-8968843
GTTTGAATTAGTCTTTGATTGCTTTGCTCT8968824TCCAAAATGGCGTACCTCTCTCATTCTCTCATCAGGCTTCATCAACAGCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:9804038-9804057
GTTTGAATTAGTCTTTGATTGTTTTGCTCT9804038TCCAAAATGGCGTACCTCTCTCATTCTCTCATCAGGCTTCATCAACAGCA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:9187941-9187960
GTTTGAATTAGTCTTTGATTGTTTTGCTCT9187941TCCAAAATGGCGTACCTCTCTCATTCTCTCATCAGGCTTCATCAACAGCA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:10006654-10006673
GTTTGAATTAGTCTTTGATTGCTTTGCTCT10006654TCCAAAATGGCGTACCTCTCTCATTCCCTCATCAGGCTTCATCAACAGCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:9098573-9098592
GTTTGAATTAGTCTTTGATTGCTTTGCTCT9098573TCCAAAATGGCGTACCTCTCTCATTCCCTCATCAGGCTTCATCAACAGCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:9254312-9254331
GTTTGAATTAGTCTTTGATTGCTTTGCTCT9254312TCCAAAATGGCGTACCTCTCTCATTCTCTCATCAGGCTTCATCAACAGCA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:9217890-9217909
GTTTGAATTAGTCTTTGATTGCTTTGCTCT9217890TCCAAAATGGCGTACCTCTCTCATTCCCTCATCAGGCTTCATCAACAGCA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:9902919-9902938
GTTTGAATTAGTCTTTGATTGTTTTGCTCT9902919TCCAAAATGGCGTACCTCTCTCATTCTCTCATCAGGCTTCATCAACAGCA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:9948190-9948209
GTTTGAATTAGTCTTTGATTGCTTTGCTCT9948190TCCAAAATGGCGTACCTCTCTCATTCCCTCATCAGGCTTCATCAACAGCA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:9719926-9719945
GTTTGAATTAGTCTTTGATTGCTTTGCTCT9719926TCCAAAATGGCGTACCTCTCTCATTCCCTCATCAGGCTTCATCAACAGCA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:9822443-9822462
GTTTGAATTAGTCTTTGATTGCTTTGCTCT9822443TCCAAAATGGCGTACCTCTCTCATTCCCTCATCAGGCTTCATCAACAGCA
Macrobrachium nipponense isolate FS-2020 chromosome 23.
CP062038.1:80439020-80439039
ACGGCTAAATAACACTCATTTATCCACAGG80439020TCCAAAATGGCGTACCTCTCCTACTTCACTCAATACACCACTGAGGAAGG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:32009065-32009084
TGCTGTTGATGAAGCCTGATGAGAGAATGA32009065GAGAGGTACGCCATTTTGGAAGAGCAAAACAATCAAAGACTAATTCAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCAAAATGGCGTACCTCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCAAAATGGCGTACCTCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=TCCAAAATGGCGTACCTCTC&k=0&no_gap=0&offset=0&limit=50
0.117 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGGTACGCCATTTTGGA&k=0&no_gap=0&offset=0&limit=38
0.118 | 0.001 | cgi_end;

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