GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:09:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

ICCV2_CAAF_821TF ICCV2 Salinity-stressed chickpea root cDNA library Cicer arietinum cDNA clone ICCV2_CAAF_821TF 5', mRNA sequence.
GR402982.1:192-211
ACTCGATGGAATAACAACAACACAAGGAAG192TCCAAAGAGAACAAGGAACCATGAAATTCTTCAATCTCATCATAATAATG
Trifolium pratense mRNA for BEL1-like homeodomain transcription factor, complete cds.
AB234880.1:1537-1556
CACAGAACTTGATGGAATAACACAAGCAAG1537TCCAAAGAGAACAAGGAACCATGAAATTCTTCAATCACCAAATCATGTGA
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:18405435-18405454
CACAGAACTTGATGGAATAACACAAGCAAG18405435TCCAAAGAGAACAAGGAACCATGAAATTCTTCAATCTCCAAATCATGTGA
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:18865410-18865429
CACAGAACTTGATGGAATAACACAAGCAAG18865410TCCAAAGAGAACAAGGAACCATGAAATTCTTCAATCTCCAAATCATGTGA
Trifolium dubium genome assembly, chromosome: 7.
OX638068.1:34889406-34889425
CACTGAACTTGATGGAATAACACAAGCAAG34889406TCCAAAGAGAACAAGGAACCATGAAATTCTTCAATCTCCGAACCATGTGA
Microcaecilia unicolor genome assembly, chromosome: 4.
LR594635.1:30850262-30850281
CCACCAGGATTGTGAAAAATAATCTTTTCC30850262GGTTCCTTGTTCTCTTTGGAATATGGAGTGGAGGAGTGGCCTAGTGGTTA
Trifolium pratense cDNA clone:RCE22338.
BB916850.1:519-538
TCACATGATTTGGTGATTGAAGAATTTCAT519GGTTCCTTGTTCTCTTTGGACTTGCTTGTGTTATTCCATCAAGTTCTGTG
Trifolium pratense cDNA clone:RCE23605.
BB917945.1:519-538
TCACATGATTTGGTGATTGAAGAATTTCAT519GGTTCCTTGTTCTCTTTGGACTTGCTTGTGTTATTCCATCAAGTTCTGTG
Trifolium pratense cDNA clone:RCE34685.
BB925827.1:519-538
TCACATGATTTGGTGATTGAAGAATTTCAT519GGTTCCTTGTTCTCTTTGGACTTGCTTGTGTTATTCCATCAAGTTCTGTG
Cicer arietinum chromosome Ca4.
CP039334.1:23555429-23555448
CATTATTATGATGAGATTGAAGAATTTCAT23555429GGTTCCTTGTTCTCTTTGGACTTCCTTGTGTTGTTGTTATTCCATCGAGT
Cicer arietinum chromosome Ca4.
CP040769.1:23555429-23555448
CATTATTATGATGAGATTGAAGAATTTCAT23555429GGTTCCTTGTTCTCTTTGGACTTCCTTGTGTTGTTGTTATTCCATCGAGT
Trifolium subterraneum genome assembly, chromosome: 3.
OX637463.1:38699074-38699093
TCACATTATTTGGTGATTGAAGAATTTCAT38699074GGTTCCTTGTTCTCTTTGGACTTGCTTGTGTTATTCCATCAAGTTCTGTG
Trifolium dubium genome assembly, chromosome: 9.
OX638070.1:9567534-9567553
TCAAATGGTTCGGAGATTGAAGAATTTCAT9567534GGTTCCTTGTTCTCTTTGGACTTGCTTGTGTTATTCCATCAAGTTCAGTG
Trifolium fragiferum genome assembly, chromosome: 8.
OX940796.1:28118197-28118216
TCACATGATTTGGAGATTGAAGAATTTCAT28118197GGTTCCTTGTTCTCTTTGGACTTGCTTGTGTTATTCCATCAAGTTCTGTG
Variovorax sp. PBL-H6 genome assembly, chromosome: 1.
LR594659.1:1773149-1773168
TGGGGAAGGAGGAGAGGTCGGTCATTGGGG1773149GGTTCCTTGTTCTCTTTGGAGAGGAGCGAGGATGGATTCTGCCCCTTGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCAAAGAGAACAAGGAACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCAAAGAGAACAAGGAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.264 | 0.255 | search_plus_done; http://172.18.8.135:50400/match?q=TCCAAAGAGAACAAGGAACC&k=0&no_gap=0&offset=0&limit=50
0.379 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTCCTTGTTCTCTTTGGA&k=0&no_gap=0&offset=0&limit=45
0.386 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).