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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 21:00:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Trifolium dubium genome assembly, chromosome: 10.
OX638071.1:15260858-15260877
TTGTTTTGCTGTTCCCATACTTAAAGCACT15260858TCCAAGTGTGCTTGTAGCTGCTAATACTCTCAAAATAAAGTCCATTATTG
Trifolium dubium genome assembly, chromosome: 14.
OX638075.1:13565337-13565356
TTGTTTTGCTGTTCCCATACTTAAAGCACT13565337TCCAAGTGTGCTTGTAGCTGCAAATACTCTTAAAATAAAGTCCATTATTG
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:42479012-42479031
TTGTTTTGCTGTTCCCATACTCAATGCACT42479012TCCAAGTGTGCTTGTAGCTGCAACTATTCTCAAAATAAAGTCCATTATTG
Accipiter gentilis genome assembly, chromosome: 15.
OV839376.1:12059074-12059093
GCCATAGTGCTGCTTGGTGGCCAAGGCATG12059074CAGCTACAAGCACACTTGGATTACTTAACATGACTCCCCAGGTCATAGTT
Trifolium pratense DNA, clone:RC0387f.ab1.
DE245310.1:190-209
CAATAATGGACTTCATTTTGAGAATATTTG190CAGCTACAAGCACACTTGGAAGTGCAGTGAGTATGGGAACAGCAAAGCAA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:17747488-17747507
CAATAATGGATTTCATTTTGAGAATATGTG17747488CAGCTACAAGCACACTTGGAAGTGCATTGAGTATGGGAACAGCAAAGCAA
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:18643115-18643134
CAATAATGGATTTCATTTTGAGAATATGTG18643115CAGCTACAAGCACACTTGGAAGTGCATTGAGTATGGGAACAGCAAAGCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCAAGTGTGCTTGTAGCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCAAGTGTGCTTGTAGCTG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.335 | 0.326 | search_plus_done; http://172.18.8.135:50400/match?q=TCCAAGTGTGCTTGTAGCTG&k=0&no_gap=0&offset=0&limit=50
0.445 | 0.111 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCTACAAGCACACTTGGA&k=0&no_gap=0&offset=0&limit=47
0.448 | 0.003 | cgi_end;

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