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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 00:50:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lagenorhynchus albirostris genome assembly, chromosome: 2.
OX459073.1:172875567-172875586
ACAAATCCCTGCCCTTGTGGAACCTTAAAT172875567TCCACAAAAATCCACGGAATACCTACCGTGTGCCAGGCGCTACAGCAGTG
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 8.
OU383781.1:38326217-38326236
TCTCTTTGGTTCATAGATTGTCTTCAGACT38326217TCCACAAAAATCCACGGAATTTTGCTATAGATTTAAGTAGAGTCTAAACG
Fringilla coelebs genome assembly, chromosome: 8.
OY740732.1:12677200-12677219
TCTCTTTGGTTCATAGACTGTCTTCAGACT12677200TCCACAAAAATCCACGGAATTTTGCTATAGATTGAAGTAGAGCCCAACTG
UCRPT01_0014L11_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0014L11, mRNA sequence.
CV710655.1:595-614
TGTAGTCTTCGTGCTTCTCAAAGAGCATTT595TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTCGCAAGCATG
UCRCS04_2_023F09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_023_T3_F09, mRNA sequence.
CV886522.1:611-630
TGTAGTCTTCGTGCTTCTCAAAGAACATTT611TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRCS08_24B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-24B05-D10-1-5.b, mRNA sequence.
CX071810.1:642-661
TGTAGTCTTCGTGCTTCTCAAAGAACATTT642TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRCS08_3A03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-3A03-B5-1-4.b, mRNA sequence.
CX074542.1:639-658
TGTAGTCTTCGTGCTTCTCAAAGAACATTT639TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRPT01_5_005_E10_T3 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_005_T3_E10, mRNA sequence.
CX543231.1:643-662
TGTAGTCTTCGTGCTTCTCAAAGAGCATTT643TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTCGCAAGCATG
UCRPT02_61C03_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-61C03-F6-1-6.b, mRNA sequence.
CX642721.1:630-649
TGTAGTCTTCGTGCTTCTCAAAGAGCATTT630TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTCGCAAGCATG
UCRCP01_013_B05_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_013_T7_B05, mRNA sequence.
CX664896.1:647-666
TGTAGTCTTCGTGCTTCTCAAAGAACATTT647TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRCP01_037_A12_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_037_T7_A12, mRNA sequence.
CX668343.1:644-663
TGTAGTCTTCGTGCTTCTCAAAGAACATTT644TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRCS10_12F11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F11-L22-6.b, mRNA sequence.
CX671709.1:520-539
TGTAGTCTTCGTGCTTCTCAAAGAACATTT520TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRCS10_17C03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C03-E5-6.g, mRNA sequence.
CX672482.1:564-583
TGTAGTCTTCGTGCTTCTCAAAGAACATTT564TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRCS10_18E05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-18E05-I10-5.b, mRNA sequence.
CX672673.1:649-668
TGTAGTCTTCGTACTTCTCAAAGAACATTT649TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTCGCAAGCATG
UCRCS10_22A03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22A03-A6-5.b, mRNA sequence.
CX673329.1:544-563
TGTAGTCTTCGTGCTTCTCAAAGAACATTT544TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRCS10_22F08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22F08-K16-5.b, mRNA sequence.
CX673439.1:658-677
TGTAGTCTTCGTACTTCTCAAAGAACATTT658TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTCGCAAGCATG
UCRCS10_2C07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-2C07-E14-5.b, mRNA sequence.
CX673845.1:563-582
TGTAGTCTTCGTGCTTCTCAAAGAACATTT563TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
UCRCA01_06J09_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0006J09, mRNA sequence.
DN625537.1:640-659
TGTAGTCTTCGTGCTTCTCAAAGAACATTT640TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTTGCAAGCATG
Citrus sinensis genome assembly, chromosome: 4.
OY754321.1:29662707-29662726
TGTAGTCTTCGTACTTCTCAAAGAACATTT29662707TCCACAAAAATCCACGGAATGGAGCGATTCCAGTTCCAGTCGCAAGCTGC
Sequence 1540 from patent US 10006042.
MI846267.1:912-931
CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
Sequence 1540 from patent US 10337023.
MO169434.1:912-931
CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
Sequence 1540 from patent US 10774340.
MV703181.1:912-931
CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
Sequence 1037 from patent US 10858403.
MX112507.1:912-931
CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
Sequence 1037 from patent US 11421004.
OO461870.1:912-931
CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
Sequence 1037 from patent US 11472853.
OO763990.1:912-931
CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
Sequence 1037 from patent US 11485761.
OO823148.1:912-931
CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
Sequence 1540 from patent US 11499161.
OO870962.1:912-931
CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
UCRCS04_2_023F09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_023_T7_F09, mRNA sequence.
CV886523.1:494-513
CATGCTTGCAACTGGAACTGGAATCGCTCC494ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
UCRCS08_24B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-24B05-D10-1-4.g, mRNA sequence.
CX071811.1:720-739
CATGCTTGCAACTGGAACTGGAATCGCTCC720ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
UCRCS08_3A03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-3A03-B5-1-5.g, mRNA sequence.
CX074543.1:406-425
CATGCTTGCAACTGGAACTGGAATCGCTCC406ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
C01016E09SK Veg1 Citrus clementina cDNA clone C01016E09, mRNA sequence.
CX288079.1:426-445
CATGCTTGCGACTGGAACTGGAATCGCTCC426ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
C05076E09SK DroRLeaf1 Citrus clementina cDNA clone C05076E09, mRNA sequence.
CX295850.1:665-684
CATGCTTGCGACTGGAACTGGAATCGCTCC665ATTCCGTGGATTTTTGTGGAA
UCRCS10_12F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F11-L22-5.g, mRNA sequence.
CX671710.1:675-694
CATGCTTGCAACTGGAACTGGAATCGCTCC675ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
UCRCS10_18E05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-18E05-I10-6.g, mRNA sequence.
CX672674.1:675-694
CATGCTTGCGACTGGAACTGGAATCGCTCC675ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
UCRCS10_22A03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22A03-B6-5.g, mRNA sequence.
CX673330.1:790-809
CATGCTTGCAACTGGAACTGGAATCGCTCC790ATTCCGTGGATTTTTGTGGAAAATGTTCTTTG
UCRCS10_22F08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22F08-L16-5.g, mRNA sequence.
CX673440.1:739-758
CATGCTTGCGACTGGAACTGGAATCGCTCC739ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
Volcani_7_16_B6 Volcani07 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX446171.1:755-774
CATGCTTGCAACTGGAACTGGAATCGCTCC755ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
Volcani_7_22_B11 Volcani07 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX446776.1:340-359
CATGCTTGCAACTGGAACTGGAATCGCTCC340ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CS00-C1-100-032-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY652363.1:478-497
CATGCTTGCGACTGGAACTGGAATCGCTCC478ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
CS00-C1-102-015-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY666198.1:290-309
GCAGCTTGCGACTGGAACTGGAATCGCTCC290ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
CS00-C1-102-053-F01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY669962.1:544-563
CATGCTTGCAACTGGAACTGGAATCGCTCC544ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAACACGAAAACTACA
CS00-C1-102-009-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY674655.1:305-324
GCAGCTTGCGACTGGAACTGGAATCGCTCC305ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAAAAGTACGAAGACTACA
CS00-C1-401-009-D07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
EY675349.1:118-137
CATGCTTGCAACTGGAACTGGAATCGCTCC118ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CS00-C1-401-011-E10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
EY675513.1:114-133
CATGCTTGCAACTGGAACTGGAATCGCTCC114ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CS00-C1-401-048-C07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
EY678438.1:182-201
CATGCTTGCGACTGGAACTGGAATCGCTCC182ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
CS00-C1-650-005-B04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY679888.1:165-184
CATGCTTGCGACTGGAACTGGAATCGCTCC165ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
CS00-C1-650-010-B07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY680351.1:533-552
CATGCTTGCGACTGGAACTGGAATCGCTCC533ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
CS00-C3-700-039-E04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY695714.1:747-766
CATGCTTGCGACTGGAACTGGAATCGCTCC747ATTCCGTGGATTTTTGTGGAAATGTTCTTTGAGAAGTACGAGACACAAGT
CS00-C3-701-014-B03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY702950.1:588-607
CATGCTTGCAACTGGAACTGGAATCGCTCC588ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CS00-C3-702-008-B09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY711476.1:255-274
CATGCTTGCAACTGGAACTGGAATCGCTCC255ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CS00-C3-702-027-G10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY713164.1:294-313
CATGCTTGCAACTGGAACTGGAATCGCTCC294ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CS00-C3-703-072-A10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY724146.1:152-171
CATGCTTGCAACTGGAACTGGAATCGCTCC152ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CS00-C3-704-048-F11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY731845.1:162-181
CATGCTTGCGACTGGAACTGGAATCGCTCC162ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
CS13-C1-001-025-A01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
EY757570.1:278-297
CATGCTTGCGACTGGAACTGGAATCGCTCC278ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
CR05-C1-102-044-F04-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY770088.1:670-689
CATGCTTGCAACTGGAACTGGAATCGCTCC670ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CR05-C1-103-035-B11-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY777464.1:242-261
CATGCTTGCAACTGGAACTGGAATCGCTCC242ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CR05-C1-103-059-A08-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY779657.1:692-711
CATGCTTGCAACTGGAACTGGAATCGCTCC692ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA
CR05-C1-103-079-B07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY781340.1:531-550
CATGCTTGCAACTGGAACTGGAATCGCTCC531ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAAACTACA
QM0AAC3CF03RM1 CCH3 Citrus clementina genomic clone CCH3029L05, genomic survey sequence.
ET082454.1:401-420
GCAGCTTGCGACTGGAACTGGAATCGCTCC401ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA
Euphrasia confusa genome assembly, chromosome: 2.
OX940950.1:1422167-1422186
GATTTTAATGGATTTTTTTGGATTTTTAAA1422167ATTCCGTGGATTTTTGTGGATTTTCTAAATCCACGGAGTCTACAAAGAGT
Euphrasia confusa genome assembly, chromosome: 7.
OX940955.1:560173-560192
GATTTTAATGGATTTTTTAGGATTTTTAAA560173ATTCCGTGGATTTTTGTGGATTTTCTAAATCTACGGAGTCTAGGAAGAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCACAAAAATCCACGGAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCACAAAAATCCACGGAAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.590 | 0.581 | search_plus_done; http://172.18.8.135:50400/match?q=TCCACAAAAATCCACGGAAT&k=0&no_gap=0&offset=0&limit=50
2.834 | 2.245 | search_minus_done; http://172.18.8.135:50400/match?q=ATTCCGTGGATTTTTGTGGA&k=0&no_gap=0&offset=0&limit=31
2.861 | 0.027 | cgi_end;

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