GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:05:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Phalaenopsis aphrodite PATC030619 mRNA sequence.
JI685013.1:126-145
ACCTGATTTAGAGATGAAATTTTGTGTAGC126TCCACTATCCACCAACACCATAATTGACTGTTTCCCGATCTGTACCCTCA
Trifolium pratense DNA, clone:RCG02938.
DE214452.1:31-50
TAATTTGGAAGAGATAAAATTATGACTAGC31TCCACTATCCACCAACACCACTACTTCAATGTTCTGTAATTTTCCTTCTA
Antiaris toxicaria isolate JCLG002 chromosome 2.
CP141154.1:95245619-95245638
CACGGTGGAGGAGATAAAATTATGGGTTGC95245619TCCACTATCCACCAACACCACCACCTCTCTGTTTTCTAACGTTCCTACGA
Antiaris toxicaria isolate JCLG002 chromosome 6.
CP141158.1:3680341-3680360
CACGGTGGAGGAGATAAAATTATGGGTTGC3680341TCCACTATCCACCAACACCACCACCTCTCTGTTCTCTAACGTTCCTACGA
Antiaris toxicaria isolate JCLG002 chromosome 6.
CP141158.1:31639952-31639971
CACGGTGGAGGAGATAAAATTATGGGTTGC31639952TCCACTATCCACCAACACCACCACCTCTCTGTTCTCTAACATTCCTACGA
Antiaris toxicaria isolate JCLG002 chromosome 9.
CP141161.1:21884671-21884690
CACGGTGGAGGAGATAAAATTATGGGTTGC21884671TCCACTATCCACCAACACCACCACCTCTCTGTTTTCTAACGTTCCTACGA
Antiaris toxicaria isolate JCLG002 chromosome 1.
CP141166.1:90372515-90372534
CACGGTGGAGGAGATAAAATTATGGGTTGC90372515TCCACTATCCACCAACACCACCACCTCTCTGTTTTCTAACGTTCCTACGA
Antiaris toxicaria isolate JCLG002 chromosome 6.
CP141171.1:3180907-3180926
CACGGTGGAGGAGATAAAATTATGGGTTGC3180907TCCACTATCCACCAACACCACCACCTCTCTGTTCTCTAACGTTCCTACGA
Antiaris toxicaria isolate JCLG002 chromosome 6.
CP141171.1:30704582-30704601
CACGGTGGAGGAGATAAAATTATGGGTTGC30704582TCCACTATCCACCAACACCACCACCTCTCTGTTCTCTAACATTCCTACGA
Antiaris toxicaria isolate JCLG002 chromosome 7.
CP141172.1:19008627-19008646
CACGGTGGAGGAGATAAAGTTATGTGTTGC19008627TCCACTATCCACCAACACCACCACCTCTCTGTTCTCTAACATTCCTACGA
Antiaris toxicaria isolate JCLG002 chromosome 12.
CP141177.1:14682210-14682229
CACGGTGGAGGAGATAAAATTATGGGTTGC14682210TCCACTATCCACCAACACCACCACCTCTCTGTTTTCTAACGTTCCTACGA
Vicia faba genome assembly, chromosome: 1S.
OX451735.1:1377255038-1377255057
AATTTGGGAGGATATTAAATTGTGGCTAGC1377255038TCCACTATCCACCAACACCACCACACCAATACTTTCTAACATACCTCCAA
Trifolium subterraneum genome assembly, chromosome: 6.
OX637466.1:47538328-47538347
GACATGAGAGGATATGAAGTTATGACTAGC47538328TCCACTATCCACCAACACCACCACATCAACTCCTTCTAACTTCCCTTCCA
Populus nigra genome assembly, chromosome: 9.
OX637680.1:10105915-10105934
GGAACATGCATACTAGGATCAAAAATTGTA10105915TCCACTATCCACCAACACCACAAAAAAGCCTATTTCATAACACCATTAAC
Euphorbia lathyris genome assembly, chromosome: 5.
OY755224.1:38631656-38631675
CAACTGTTGATCTAAGAAGCTATGAGTGCT38631656TCCACTATCCACCAACACCATTATCATGCGTTTGTTGATCATGCCTTTCA
Umbilicus rupestris genome assembly, chromosome: 10.
OY787614.1:10600467-10600486
CAAGCGAGTCTGCAATAAGTTATGAGTGGA10600467TCCACTATCCACCAACACCACCACATGAAAGCCTGTAATGCATCCAGATA
Umbilicus rupestris genome assembly, chromosome: 15.
OY787619.1:1861751-1861770
TAAGCGTTGGGAAATGAAATTGTGTGTGGC1861751TCCACTATCCACCAACACCACCACTTCTCTCGCATCAATCCAGCCCTTAA
Lathyrus sativus genome assembly, chromosome: 5.
OZ012739.1:77035070-77035089
AATTTGGGAGGATATAAAATTGTGGCTAGC77035070TCCACTATCCACCAACACCACCACATCAATACTTTCTAACTTACCTCCAA
Cheilosia scutellata genome assembly, chromosome: 3.
OY015313.1:53357420-53357439
GTATCTCATGAAAATCAACGAGTATGCCCA53357420TCCACTATCCACCAACACCAATCGCATTTCAAACCAATTTCACCAACTTC
Trifolium pratense DNA, clone:RCG02589.
DE214175.1:194-213
TAGGAGGAAAATTACAGAACATTGAAGTAG194TGGTGTTGGTGGATAGTGGAGCTAGTCATAATTTTATCTCTTCCAAATTA
Trifolium pratense DNA, clone:RCG22972.
DE229767.1:190-209
TCCAAGGTGAAATGTGTGGAGTTCCTGTGT190TGGTGTTGGTGGATAGTGGAGCCACACACAATTTCATTTCTCAGAAATTG
Trifolium pratense DNA, clone:RCG01025.
DE246681.1:194-213
TAGAAGGAAAATTACAGAACATTGAAGTAG194TGGTGTTGGTGGATAGTGGAGCTAGTCATAATTTTATCTCTTCCAAATTA
3022_2D03F Phalaenopsis equestris BAC ends Phalaenopsis equestris genomic, genomic survey sequence.
HN178319.1:667-686
TGAGGGGATGGATCAGGGAATGTCCGATTG667TGGTGTTGGTGGATAGTGGAGCCACCATAATTTCATCTCAAATCAGGTCA
Antiaris toxicaria isolate JCLG002 chromosome 2.
CP141154.1:52443689-52443708
TCGTAGGAATGTTAGAGAACAGAGAGGTGG52443689TGGTGTTGGTGGATAGTGGAGCAACCCATAATTTTATTTCTTCCACCGTG
Antiaris toxicaria isolate JCLG002 chromosome 1.
CP141166.1:81925049-81925068
TCGTAGGAACGTTAGAGAACAGAGAGGTGG81925049TGGTGTTGGTGGATAGTGGAGCAACCCATAATTTTATCTCCTCCACCGTG
Antiaris toxicaria isolate JCLG002 chromosome 2.
CP141167.1:33339648-33339667
TCGTAGGAATGTTAGAGAACAGAGAGGTGG33339648TGGTGTTGGTGGATAGTGGAGCAACCCATAATTTTATTTCTTCCACCGTG
Antiaris toxicaria isolate JCLG002 chromosome 6.
CP141171.1:59041958-59041977
TCGTAGGAACGTTAGAAAACAGAGAGGTGG59041958TGGTGTTGGTGGATAGTGGAGCAACCCATAATTTTATCTCCTCCACCGTG
Euphorbia lathyris genome assembly, chromosome: 2.
OY755221.1:78491388-78491407
TGAAAGGCATGATCAACAAACGCATGATAA78491388TGGTGTTGGTGGATAGTGGAAGCACTTATACCTTCTATTGAGCGATTTCC
Umbilicus rupestris genome assembly, chromosome: 3.
OY787607.1:13822246-13822265
TTAAGGGCATGATTGATGCAAGAGAAGTGG13822246TGGTGTTGGTGGATAGTGGAGTCAAACACAATTTCATTTCTCAACGCTTA
Umbilicus rupestris genome assembly, chromosome: 7.
OY787611.1:4979989-4980008
GTAAGGACATGATTGGTGCACGAGAAGTGG4979989TGGTGTTGGTGGATAGTGGAGCCATGCATAATTTCATTTCCCAATGTTTA
Lordithon lunulatus genome assembly, chromosome: 2.
OZ012667.1:42366467-42366486
CTCTGGTAACAACGACCCGAAACACCTATA42366467TGGTGTTGGTGGATAGTGGATTGGAAAATTACAGGATCAGTCCTTAGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCACTATCCACCAACACCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCACTATCCACCAACACCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.129 | 0.120 | search_plus_done; http://172.18.8.135:50400/match?q=TCCACTATCCACCAACACCA&k=0&no_gap=0&offset=0&limit=50
0.254 | 0.125 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTGTTGGTGGATAGTGGA&k=0&no_gap=0&offset=0&limit=31
0.262 | 0.008 | cgi_end;

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