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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 06:11:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rana temporaria genome assembly, chromosome: 1.
LR991680.1:249320424-249320443
AGAAGCTGATTGGCTACAATGCAAAGCTAC249320424TCCAGATTTTGCACTCGCTAGTTTTAGTAAATCAACCCCACAGTTTGCCT
KS20006E12 KS20 Capsicum annuum cDNA, mRNA sequence.
GD093879.1:269-288
GTAGCTCTTGTGGGTGGAAACCACACCGCC269TCCAGATTTTGCACTCGCTAAATTCACCTTTTTCCCACCGCTGGATTTTC
CBPH4492.b1 CBPH Mimulus lewisii floral buds (H) Erythranthe lewisii cDNA clone CBPH4492 5', mRNA sequence.
GR195115.1:298-317
GTTGCTCTCGTGGGTGGAAATCACACCGCC298TCCAGATTTTGCACTCGCTAAGGATTTCCGAACGCCGCCGCGCTTGTTTC
CGLSC1NG-T3-009_N24_17APR2009_084 CGLSC1NG cell culture from Corydalis sempervirens (syn. Corydalis glauca) Capnoides sempervirens cDNA, mRNA sequence.
JG587511.1:221-240
GTAGCCCTCGTGGGTGGAAACCACACCGCT221TCCAGATTTTGCACTCGCTAAACCCATCTCCCCCCAATTCCCCCAATTTT
DSPSC1NG-T3-007_H10_15APR2009_041 DSPSC1NG cell culture from Dicentra spectabilis Lamprocapnos spectabilis cDNA, mRNA sequence.
JG606750.1:201-220
GTAGCCCTCGTGGGTGGAAACCACACCGCT201TCCAGATTTTGCACTCGCTAAACCCCATTTCTCAATTTCCCCCTTTCTCT
TSA: Cajanus cajan cultivar UPAS 120 contig10053.UPAS mRNA sequence.
EZ627770.1:132-151
GGTGTCCTCGTGGGTGGAAACCATACCTCC132TCCAGATTTTGCACTCGCTAATTCCTCTTTCTTCTTCCCTATCGGCTTCA
TSA: Phalaenopsis aphrodite PATC141442 mRNA sequence.
JI642969.1:71-90
GTCCTCCTCGTGGGTGGAAACCACACCTCC71TCCAGATTTTGCACTCGCTAAACGGACATTTCTCCCCCCTTCCGGCTTAC
TSA: Capsicum annuum MGMT_Contig38895 mRNA sequence.
JW089139.1:331-350
GTAGCTCTTGTGGGTGGAAACCACACCGCC331TCCAGATTTTGCACTCGCTAAATTCACCTTTTTCCCACCGCTGGATTTTC
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:161534639-161534658
GTAGCTCTTGTGGGTGGAAACCACACCGCC161534639TCCAGATTTTGCACTCGCTAAATTCACCTTTTTCCCACCGCTGGATTTTC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:139445022-139445041
GTAGCTCTTGTGGGTGGCAACCACACCGCC139445022TCCAGATTTTGCACTCGCTAAATTCACCTTTTTCCAACCGCTGGATTTTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:174277103-174277122
GTAGCTCTTGTGGGTGGAAACCACACCGCC174277103TCCAGATTTTGCACTCGCTAAATTCACCTTTTTCCCACCGCTGGATTTTC
Inga oerstediana genome assembly, chromosome: 5.
OY723403.1:5984725-5984744
GTTATCCTCGTGGGTGGAAATCACACTTCC5984725TCCAGATTTTGCACTCGCTAATTCCTTTCCCGCTTCTCCATTCCAGCTTT
Inga laurina genome assembly, chromosome: 8.
OY979708.1:5824778-5824797
GTTATCCTCGTGGGTGGAAATCACACTTCC5824778TCCAGATTTTGCACTCGCTAATTCCTTTCCCGCTTCTCCATTCCGGCTTT
Myathropa florea genome assembly, chromosome: 1.
OV884002.1:6391947-6391966
TCTGTAAAGCATTCAGGAGTGAGGTACCTC6391947TCCAGATTTTGCACTCGCTAGAGTTCCCTATTTTGAGGATGGTGACAATG
TSA: Allium sativum Unigene126767_All.Ascvb, mRNA sequence.
JV252090.1:156-175
AGTACAAACAGCGGGGGAGGAGGAAGAGAC156TAGCGAGTGCAAAATCTGGAGGAGGTGTGGTTACCACCCACGAGGGCAAC
Euphorbia peplus chromosome 3.
CP110839.1:18281016-18281035
AACTGGTAGCTAAAAATGAAAATATTGCTT18281016TAGCGAGTGCAAAATCTGGAGGCTGTATGGTTCCCACCCACGAGGACAAC
Verbena officinalis genome assembly, chromosome: 5.
OY292389.1:32007952-32007971
AGAAACAAGCGCGGCGATGGAGGGAAATTC32007952TAGCGAGTGCAAAATCTGGATGCGGTGTGGTTTCCACCCACTAGTGCAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCAGATTTTGCACTCGCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCAGATTTTGCACTCGCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.824 | 0.815 | search_plus_done; http://172.18.8.135:50400/match?q=TCCAGATTTTGCACTCGCTA&k=0&no_gap=0&offset=0&limit=50
0.972 | 0.148 | search_minus_done; http://172.18.8.135:50400/match?q=TAGCGAGTGCAAAATCTGGA&k=0&no_gap=0&offset=0&limit=36
0.974 | 0.002 | cgi_end;

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