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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 08:35:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

USDA-FP_117000-276 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-15_G10 5', mRNA sequence.
CF419336.1:370-389
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG370TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
USDA-FP_121000-017 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-33_B02 5', mRNA sequence.
CF505522.1:123-142
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG123TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
USDA-FP_123000-370 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-61_E03 5', mRNA sequence.
CF507869.1:194-213
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG194TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
USDA-FP_124000-399 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-72_A08 5', mRNA sequence.
CF508896.1:318-337
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG318TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGA
UCRCS02_05N21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N21, mRNA sequence.
CF834638.1:176-195
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG176TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
UCRCS02_05N22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N22, mRNA sequence.
CF834640.1:176-195
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG176TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
UCRCS03_05C21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05C21, mRNA sequence.
CF837762.1:682-701
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG682TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRCS03_05P17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05P17, mRNA sequence.
CF838240.1:549-568
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG549TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
CGF1004553_B10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_B10 5', mRNA sequence.
CK935656.1:706-725
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG706TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
CGF1004552_B09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_B09 5', mRNA sequence.
CK935738.1:702-721
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG702TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRPT01_0011C07_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0011C07, mRNA sequence.
CV708323.1:686-705
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG686TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
UCRPT01_0011H16_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0011H16, mRNA sequence.
CV708537.1:693-712
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG693TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
UCRPT01_0013L24_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0013L24, mRNA sequence.
CV710013.1:669-688
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG669TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
UCRPT01_0014P01_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0014P01, mRNA sequence.
CV710806.1:669-688
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG669TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
UCRPT01_0016H22_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0016H22, mRNA sequence.
CV711811.1:669-688
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG669TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
UCRCS04_2_011C07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C07, mRNA sequence.
CV884896.1:669-688
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG669TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRCS04_2_011D08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_D08, mRNA sequence.
CV884923.1:662-681
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG662TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRCS07_16H06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-16H06-O12-1-4.g, mRNA sequence.
CX044337.1:682-701
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG682TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
UCRCS07_5B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-5B02-D3-1-6.g, mRNA sequence.
CX045978.1:515-534
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG515TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
UCRCS09_17A05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-17A05-A10-1-5.b, mRNA sequence.
CX047868.1:668-687
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG668TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRCS09_25E07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-25E07-I14-1-5.g, mRNA sequence.
CX049093.1:662-681
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG662TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRCS09_28F02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-28F02-K3-1-5.g, mRNA sequence.
CX049616.1:682-701
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG682TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
UCRCS09_33A04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-33A04-A8-1-4.g, mRNA sequence.
CX050528.1:662-681
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG662TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRCS09_40B04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-40B04-C7-1-6.g, mRNA sequence.
CX051461.1:267-286
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG267TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRCS08_22A12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-22A12-A24-1-4.g, mRNA sequence.
CX071500.1:678-697
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG678TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGA
UCRCS08_24G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-24G04-N8-1-4.g, mRNA sequence.
CX071897.1:669-688
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG669TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
UCRCS08_29B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-29B06-C11-1-4.g, mRNA sequence.
CX072608.1:596-615
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG596TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
C02008H04SK IF1 Citrus clementina cDNA clone C02008H04, mRNA sequence.
CX289079.1:313-332
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG313TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
UCRPT01_5_029_B11_T3 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_029_T3_B11, mRNA sequence.
CX546483.1:674-693
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG674TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
UCRPT02_67G12_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-67G12-N24-1-6.g, mRNA sequence.
CX643333.1:669-688
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG669TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
UCRCP01_031_A04_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_031_T3_A04, mRNA sequence.
CX667401.1:669-688
GAGCTTTTCGGCGTTCTTCAAGCACGCTTG669TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGAGT
UCRCS10_9E03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9E03-I5-5.g, mRNA sequence.
CX674920.1:686-705
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG686TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
Citrus unshiu mRNA, clone: FBI1443, 5'-end sequence, expressed in floral bud.
DC889521.1:619-638
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG619TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTGATGCATGAGT
Citrus limon mRNA, clone: LLL1911, 5'-end sequence, expressed in leaf.
DC892767.1:129-148
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG129TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
Citrus sinensis mRNA, clone: VS28237, 5'-end sequence, expressed in seed.
DC900200.1:651-670
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG651TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
Citrus sinensis mRNA, clone: VS28951, 3'-end sequence, expressed in seed.
DC900379.1:58-77
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG58TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
USDA-FP_16798 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_B12 5', mRNA sequence.
DR908670.1:214-233
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG214TCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGCTGATGCATGAGT
USDA-FP_18497 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-49_A09 5', mRNA sequence.
DR910369.1:65-84
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG65TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA12BC03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY263628.1:681-700
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG681TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA12BG03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY263675.1:461-480
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG461TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA17BF08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY265471.1:674-693
TAGCTTTTCGGAGTTCTTCAAGCACGCTTG674TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA20CD08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267124.1:674-693
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG674TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA24BG08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY268527.1:674-693
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG674TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA30AC06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY272039.1:684-703
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG684TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA35AG08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY273890.1:690-709
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG690TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA40CE12RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276249.1:681-700
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG681TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA42DH04RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY277107.1:703-722
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG703TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA4CC06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY279847.1:674-693
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG674TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA5AA10RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY283610.1:684-703
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG684TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
IC0AAA62CD10RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY284876.1:663-682
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG663TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
Citrus jambhiri RlemTLP mRNA for thaumatin-like protein, complete cds.
AB467316.1:662-681
GAGCTTTTCGGAGTTCTTCAAGCACGCTTG662TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
Aleiodes leptofemur genome assembly, chromosome: 14.
OZ012622.1:10970761-10970780
TTTACATCTGTGTTATGTCTTATTAACCAC10970761TCCAGCCACGATGACTTATGAATTGGATGCAAGGGATTCTTTATTGATAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCAGCCACGATGACTTATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCAGCCACGATGACTTATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.677 | 1.668 | search_plus_done; http://172.18.8.135:50400/match?q=TCCAGCCACGATGACTTATG&k=0&no_gap=0&offset=0&limit=50
1.743 | 0.066 | search_minus_done; http://172.18.8.135:50400/match?q=CATAAGTCATCGTGGCTGGA&k=0&no_gap=0&offset=0&limit=0
1.743 | 0.000 | cgi_end;

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