GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 12:17:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Porphyra yezoensis cDNA, clone:PFL017h08_r, 5'end.
AU191538.1:477-496
GGCTACTGCTACTACAAGGTGTACTGGAGC477TCCAGCTATGACAACAACGCCAACAATG
Porphyra yezoensis cDNA, clone:PFL073a08_r, 5'end.
AU195299.1:50-69
GGCTACTGCTACTACAAGGTGTACTGGAGC50TCCAGCTATGACAACAACGCCAACAATGCCAACAACGCGAACAACAACAA
Cordilura impudica genome assembly, chromosome: 1.
OY821517.1:30520157-30520176
TATTACCACAACGACCACAAAAGCAACAAG30520157TCCAGCTATGACAACAACGCAACATTTAGAATAACAACAAGAACAATATA
Cordilura impudica genome assembly, chromosome: 1.
OY821517.1:226319403-226319422
TATTACCACAACGACCACAAAAACAACAAG226319403TCCAGCTATGACAACAACGCAACATTTAGAATAACAACAAGAACAATATA
Cordilura impudica genome assembly, chromosome: 2.
OY821518.1:123945864-123945883
TATTACCACAACGACGACAAAAACAACAAG123945864TCCAGCTATGACAACAACGCAACATTTAGAACAACAACAAGAACAATATA
Cordilura impudica genome assembly, chromosome: 2.
OY821518.1:229529480-229529499
TATTACCACAACGACCACAAAAACAACAAG229529480TCCAGCTATGACAACAACGCAACATTTAGAATAACAACAAGAACAATATA
Cordilura impudica genome assembly, chromosome: 3.
OY821519.1:101474738-101474757
TATTACCACAACGACCACAAAAACAACAAG101474738TCCAGCTATGACAACAACGCAACATTTAGAATAACAACAAGAACAATATA
Cordilura impudica genome assembly, chromosome: 4.
OY821520.1:141975209-141975228
TATTACCACAACGCCCACAAAAACAACAAG141975209TCCAGCTATGACAACAACGCAACATTTAGAATAACAACAAGAACAATATA
Cordilura impudica genome assembly, chromosome: 4.
OY821520.1:147214967-147214986
TATTACCACAACGACCACAAAAACAACAAG147214967TCCAGCTATGACAACAACGCAACATTTAGAATAACAACAAGAACAATATA
Cordilura impudica genome assembly, chromosome: 4.
OY821520.1:161065313-161065332
TATTACCACAACGACCACAAAAACAACAAG161065313TCCAGCTATGACAACAACGCAACATTTAGAATAACAACAAGAACAATATA
Cordilura impudica genome assembly, chromosome: 6.
OY821522.1:16556498-16556517
TATTACCACAATGACCACAAAAACAACAAG16556498TCCAGCTATGACAACAACGCAACATTCAGAATAACAACAAGAACAATATA
py593 PY Sporophyte cDNA Library Pyropia yezoensis cDNA, mRNA sequence.
CX874353.1:256-275
TTGTTGTTGTTCGCGTCGTTGGCATTGTTG256GCGTTGTTGTCATAGCTGGAGCTCCAGTACACCTTGTAGTAGCAGTAGCC
py801 PY Sporophyte cDNA Library Pyropia yezoensis cDNA, mRNA sequence.
CX874522.1:244-263
TTGTTGTTGTTCGCGTTGTTGGCATTGTTG244GCGTTGTTGTCATAGCTGGAGCTCCAGTACACCTTGTAGTAGCAGTAGCC
Cordilura impudica genome assembly, chromosome: 1.
OY821517.1:97072458-97072477
TATATTGTTCTTGTTGTTATTCTAAATGTT97072458GCGTTGTTGTCATAGCTGGACTTGTTGTTTTTGTGGTCGTTGTGGTAATA
Cordilura impudica genome assembly, chromosome: 1.
OY821517.1:147882723-147882742
TATATTTTTCTTGTTGTTTTTCTAAATGTT147882723GCGTTGTTGTCATAGCTGGACTTGTTGTTTTTGTGGTCGTTGTGGTAATA
Cordilura impudica genome assembly, chromosome: 1.
OY821517.1:199356834-199356853
TATATTGTTCTTGTTCTTATTCTAAATGTT199356834GCGTTGTTGTCATAGCTGGACTTGTTGTTTTTGTGGTCGTTGTGATAATA
Cordilura impudica genome assembly, chromosome: 1.
OY821517.1:214146564-214146583
CATATTGTTCCTGTTGTTATTCTAAATGTT214146564GCGTTGTTGTCATAGCTGGACTTGTTGTTTTTGTGGTCGTCGTGGTAATA
Cordilura impudica genome assembly, chromosome: 2.
OY821518.1:147706775-147706794
TATATTGTTCTTGTTGTTATTCTAAATGTT147706775GCGTTGTTGTCATAGCTGGACTTGTTGTTTTTGTGGTCGTTGTGGTAATA
Cordilura impudica genome assembly, chromosome: 3.
OY821519.1:102942663-102942682
TATATTGTTCTTGTTGTTATTCTAAATGTT102942663GCGTTGTTGTCATAGCTGGACTTGTTGTTTTTGTGGTCGCTGTGGTAATA
Cordilura impudica genome assembly, chromosome: 4.
OY821520.1:96241134-96241153
TATATTATTCTTGTTGTTATTCTATATGTT96241134GCGTTGTTGTCATAGCTGGACTTACTGTTTTTGTGGTCGTTGTGGTAATA
Cordilura impudica genome assembly, chromosome: 5.
OY821521.1:138342700-138342719
TATATTGTTCTTGTTGTTATTCTAAATGTT138342700GCGTTGTTGTCATAGCTGGACTTGTTCTTTTTGTGGTCGTTGTGGTAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCAGCTATGACAACAACGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCAGCTATGACAACAACGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.173 | 0.165 | search_plus_done; http://172.18.8.135:50400/match?q=TCCAGCTATGACAACAACGC&k=0&no_gap=0&offset=0&limit=50
0.494 | 0.321 | search_minus_done; http://172.18.8.135:50400/match?q=GCGTTGTTGTCATAGCTGGA&k=0&no_gap=0&offset=0&limit=39
0.500 | 0.006 | cgi_end;

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