GGGenome | Results

2025-04-06 01:47:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

ZDSB28F LIB-EST ZDSB (Zhenghe Dabaicha sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone ZDSB28, mRNA sequence.
JZ495071.1:90-113

AGACGTTATTTTTAGCAAACAACCACTAAT90TCCATACATACATAAGGTAAAGAAATTAAAATTTCATGTTCAACTTCTCATTTC

TSA: Camellia sinensis tea_rep_c691 mRNA sequence.
KA280133.1:20-43

AGTTCAAACAACCACTAAT20TCCATACATACATAAGGTAAAGAATTAAAATTTCATGTTCAACTTCTCATTTCT

JP 2003088373-A/1: A Caffeine Synthase and A Gene thereof.
BD285420.1:1379-1402

GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA

JP 2003088373-A/2: A Caffeine Synthase and A Gene thereof.
BD285421.1:1379-1402

GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA

Camellia sinensis mRNA, clone: SS08B12, 5' end sequence, expressed in shoot stems.
FS952720.1:249-272

GAAATGAGAAGTTGAACATGAAATTTTAAT249TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT

ZYta110 Young leaves cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA 5', mRNA sequence.
GH159040.1:882-905

GAAATGAGAAGTTGAACATGAAATTTTAAT882TTCTTTACCTTATGTATGTATGGAATTAGTGGTTG

PA_T348_TRA_5422 Camellia assamica PA1 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS391644.1:520-543

AGAAATGAGAAGTTGAGCATGAAATTTAAT520TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTGA

Tea031_2005-11-02_1/Tea031_H04_009_1 Camellia sinensis (tea) cultivar DT1 EST library Camellia sinensis cDNA, mRNA sequence.
JK479739.1:223-246

GAAATGAGAAGNTGAACATGAAATTTTAAT223TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGNNNNNNGNNNAANAAAA

TSA: Camellia sinensis tea_rep_c951 mRNA sequence.
KA280393.1:1462-1485

GAAATGAGAAGTTGAACATGAAATTTTAAT1462TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT

TSA: Camellia sinensis tea_rep_c1123 mRNA sequence.
KA280564.1:1896-1919

GAAATGGGAAGTTGAATATGAAATTTTAAT1896TTCTTTACCTTATGTATGTATGGAAT

TSA: Camellia sinensis tea_rep_c2762 mRNA sequence.
KA282189.1:1431-1454

AGAAATGAGAAGTTGAACATGAAATTTTAA1431TTCTTTACCTTATGTATGTATGGAATTAGTGGTTG

Camellia irrawadiensis ICS1 mRNA for theobromine synthase, complete cds.
AB056108.1:1379-1402

GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA

Camellia irrawadiensis ICS2 mRNA for theobromine synthase, complete cds.
AB207816.1:1316-1339

GAAATGAGAAGTTGAACATGAAATTTTAAT1316TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAAAGTCT

Camellia sinensis caffeine synthase 2 (TCS2) gene, complete cds.
JX647691.1:6471-6494

GAAATGAGAAGTTGAACATGAAATTTTAAT6471TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT

Camellia sinensis caffeine synthase 4 (TCS4) gene, complete cds.
JX647693.1:6429-6452

GAAATGAGAAGTTGAACATGAAATTTTAAT6429TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTCCTAAAAATAACGTCT

Camellia sinensis caffeine synthase 6 (TCS6) pseudogene, complete sequence.
JX647695.1:5655-5678

AAATGAGAAGTTTGAACATGAAATTTTAAT5655TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
0.236 | 0.228 | search_plus_done; http://172.18.8.135:50400/match?q=TCCATACATACATAAGGTAAAGAA&k=0&no_gap=0&offset=0&limit=50
0.679 | 0.443 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTTACCTTATGTATGTATGGA&k=0&no_gap=0&offset=0&limit=48
0.689 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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