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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:34:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Electrona antarctica genome assembly, chromosome: 14.
OX578259.1:12233157-12233178
AGTACTTGGGGAAAAACATAATAATAGAGA12233157TCCATGCTTAAAAACAGCAAAACGATGACAAATAATTGACAATTATAAATAA
rayctn0_0084_B11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO095603.1:14-35
CCGTTCAGAAAAA14TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT
rayctn0_0116_C08.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO098108.1:29-50
GCACAAACAACACATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT
rayctn0_0120_D04.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO098443.1:29-50
GCACAAACAACGCATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATCACGTTGAAATGGAGTTTCATAATG
rayctn0_0152_A10.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO100933.1:29-50
GCACAAACAACGCATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATCATGTTGAAATGGAGTTTCATAATG
rayctn0_0158_F01.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO101466.1:29-50
GCACAAACAACACATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT
rcrycc0_0019_C09.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO108059.1:29-50
GCACAAACAACACATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT
G04_51611.76.S1108242767.LDYN1-8140.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ117718.1:79-100
GTGCACAAACAACACATTCATTCAGAAAAA79TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:15190776-15190797
GTGCACAAACAACACATTCATTCAGAAAAA15190776TCCATGCTTAAAAACAGCAAAAACAATCATGTTGAAATGGAGTTTCATATTT
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:21268323-21268344
ATGCACAAACAACGCATTCATTCAGAAAAA21268323TCCATGCTTAAAAACAGCAAAAACAATCATGTTGAAATGGAGTTTCATAATG
Sequence 10850 from patent US 7557201.
GP479853.1:424-445
CATTATGAAACTCCATTTCAACATGATTGT424TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCG
GA__Ea0029O13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0029O13f, mRNA sequence.
BE054786.2:444-465
CATTATGAAACTCCATTTCAACATGATTGT444TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAAAAAAAAAAAAAAAAAA
GA__Ea0013G11f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0013G11f, mRNA sequence.
BE055670.2:208-229
CATTATGAAACTCCATTTCAACATGATTGT208TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAT
GA__Eb0032D10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032D10f, mRNA sequence.
BF278253.2:440-461
CATTATGAAACTCCATTTCAACATGATTGT440TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAT
GR__Ea06G05.f GR__Ea Gossypium raimondii cDNA clone GR__Ea06G05 5', mRNA sequence.
CO087768.1:233-254
AAATATGAAACTCCATTTCAACATGATTGT233TTTTGCTGTTTTTAAGCATGGATTTTTCTG
CM026A10 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR454655.1:415-436
AAATATGAAACTCCATTTCAACATCATTGT415TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGCAC
UFL_305_34 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES812743.1:421-442
AAATATGAAACTCCATTTCAACATCATTGT421TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGCAA
128A04 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV487831.1:417-438
AAATATGAAACTCCATTTCAACATCATTGT417TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGCAC
153H05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV489059.1:419-440
AAATATGAAACTCCATTTCAACATCATTGT419TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTAGTTTGTGCAC
B11_P-20_092 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX166014.1:534-555
AAATATGAAACTCCATTTCAACATCATTGG534TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGCAA
EST006405 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 31-K06 5', mRNA sequence.
GR713205.1:425-446
AAATATGAAACTCCATTTCAACATCATTGT425TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATG
EST008837 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 40-F09 5', mRNA sequence.
GR715637.1:138-159
CATTATGAAACTCCATTTCAACATGATTGT138TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAA
F08-110F08 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796522.1:605-626
AAATATGAAACTCCATTTCAACATCATTGT605TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGC
G09-062G9 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796859.1:605-626
AAATATGAAACTCCATTTCAACATCATTGT605TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGC
B06-116B06 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK797169.1:615-636
AAATATGAAACTCCATTTCAACATCATTGT615TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGC
E07-GC11293 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK809422.1:494-515
AAATATGAAACTCCATTTCAACATCATTGT494TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGC
A08-GC6497 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810374.1:441-462
AAATATGAAACTCCATTTCAACATCATTGT441TTTTGCTGTTTTTAAGCATGGATTTTTCTC
F09-GC4957 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810545.1:414-435
CATTATGAAACTCCATTTCAACATGATTGT414TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATT
A02-GC0305 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810660.1:400-421
CATTATGAAACTCCATTTCAACATGATTGT400TTTTGCTGTTTTTAAGCATGGATTTTTCTG
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:45097199-45097220
AAATATGAAACTCCATTTCAACATGATTGT45097199TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAC
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:104391029-104391050
CATTATGAAACTCCATTTCAACATGATTGT104391029TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCATGCTTAAAAACAGCAAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCATGCTTAAAAACAGCAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.192 | 1.184 | search_plus_done; http://172.18.8.135:50400/match?q=TCCATGCTTAAAAACAGCAAAA&k=0&no_gap=0&offset=0&limit=50
2.638 | 1.445 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTGCTGTTTTTAAGCATGGA&k=0&no_gap=0&offset=0&limit=40
2.651 | 0.014 | cgi_end;

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