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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 20:59:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

RR1CE96TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748714.1:170-189
AGATAGAAACCATCGTTTTGGAAACCAAAA170TCCATGGAACTCGGAAAGACGGGCAATGTCAGCTTTGAGTTCATTCGGTC
RR4DD78TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922290.1:406-425
AGATAGGAACCATCGTTTTGGAAACCAAAA406TCCATGGAACTCGGAAAGACGGGCAATGTCAGCTTTGAGTTCATTCGGTC
Raphanus sativus mRNA, clone: RSCS11L17, 5' end sequence.
FY449906.1:106-125
AGATAGGAACCATCGTTTTGGAAACCAAAA106TCCATGGAACTCGGAAAGACGGGCAATGTCAGCTTTGAGTTCATTCGGTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_65807.
FX797608.1:299-318
AGATAGGAACCATCGTTTTGGAAACCAAAA299TCCATGGAACTCGGAAAGACGGGCAATGTCAGCTTTGAGTTCATTCGGTC
Raphanus sativus cultivar WK10039 clone RsH054D04, *** SEQUENCING IN PROGRESS ***, 9 ordered pieces.
AC255276.1:54453-54472
AGATAGGAACCATCGTTTTGGAAACCAAAA54453TCCATGGAACTCGGAAAGACGGGCAATGTCAGCTTTGAGTTCATTCGGTC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_903.
FX665052.1:761-780
GACCGAATGAACTCAAAGCTGACATTGCCC761GTCTTTCCGAGTTCCATGGATTTTGGTTTCCAAAACGATGGTTCCTATCT
TSA: Raphanus sativus RS06701 mRNA sequence.
JT791248.1:655-674
GACCGAATGAACTCAAAGCTGACATTGCCC655GTCTTTCCGAGTTCCATGGATTTTGGTTTCCAAAACGATGGTTCCTATCT
TSA: Raphanus sativus RS06702 mRNA sequence.
JT791249.1:138-157
CAGAAGGAGTCGACCCTTCACTTGGTGCCC138GTCTTTCCGAGTTCCATGGATTTTGGTTTCCAAAACGATGGTTCCTATCT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:57772900-57772919
GACCGAATGAACTCAAAGCTGACATTGCCC57772900GTCTTTCCGAGTTCCATGGATTTTGGTTTCCAAAACGATGGTTCCTATCT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:57772900-57772919
GACCGAATGAACTCAAAGCTGACATTGCCC57772900GTCTTTCCGAGTTCCATGGATTTTGGTTTCCAAAACGATGGTTCCTATCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCATGGAACTCGGAAAGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCATGGAACTCGGAAAGAC | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.511 | 0.502 | search_plus_done; http://172.18.8.135:50400/match?q=TCCATGGAACTCGGAAAGAC&k=0&no_gap=0&offset=0&limit=50
0.635 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTTTCCGAGTTCCATGGA&k=0&no_gap=0&offset=0&limit=45
0.638 | 0.003 | cgi_end;

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