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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:54:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rattus norvegicus clone CH230-201C23, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC098920.6:64462-64481
ACCAATGCTTCACTGCCTATGTTAGAAAAT64462TCCATTTGTCCCTTGAATCTAATTTGTCTACAAAAAGACCATTAGGTCTC
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:93123509-93123528
GTCATAAGAGAAAGCTCTAGATTGTCCTTA93123509TCCATTTGTCCCTTGAATCTTTTGTTATTAAAAAATTCAATTGGGTCCTC
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:106128449-106128468
GTCATAAGAGAAAGCTCTAGATTTTCCTTA106128449TCCATTTGTCCCTTGAATCTTTTGTTATTAAAAAATTCAACTGGGCCCTC
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:137642730-137642749
GTCATAAGAGAAAGCTCTAGATTTTCCTTA137642730TCCATTTGTCCCTTGAATCTTTTGTTATTAAAAAATTCAATTTGGTCCTC
GR__Eb018F11.r GR__Eb Gossypium raimondii cDNA clone GR__Eb018F11 3', mRNA sequence.
CO116195.1:624-643
GAGGACCCAATTGAATTTTTTAATAACAGA624AGATTCAAGGGACAAATGGATAAGGAAAATCTAGAGCTCTCTCTTATGAC
Gossypioides kirkii chromosome KI_06.
CP032248.1:41208790-41208809
GAGGACCCAATTGAATTTTTTAATAACAAA41208790AGATTCAAGGGACAAATGGATAAGGAAAATCTAGAGCTTTCTCTTATGAC
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:1592530-1592549
GAGGACCCAATTGAATTTTTTAATAACAGA1592530AGATTCAAGGGACAAATGGATAAGGAAAATCTAGAGCTCTCTCTTATGAC
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:1526496-1526515
GAGGACCCAATTGAATTTTTTAATAACAAA1526496AGATTCAAGGGACAAATGGATAAGGAAAATCTAGAGCTTTCTCTTATGAC
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:1829202-1829221
GAGGACCCAATTGAATTTTTTAATAACAAA1829202AGATTCAAGGGACAAATGGATAAGGACAATCTAGAGCTTTCTCTTATGAC
Gossypium herbaceum clone NBRI_PC_54 simple sequence repeat marker, genomic sequence.
HQ524649.1:213-232
GAGGACCCAATTGAATTTTTTAATAACAAA213AGATTCAAGGGACAAATGGATAAGGACAATCTAGAGCTTTCTCTTATGAC
Gossypium herbaceum clone NBRI_C_EYT27PB01B42OJ simple sequence repeat marker, mRNA sequence.
HQ527403.1:162-181
TGAGGACCCAATTGAATTTTTAATAACAAA162AGATTCAAGGGACAAATGGATAAGGACAATCTAGAGCTTTCTCTTATGAC
Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds.
JQ837700.1:487-506
GAGGACCCAATTGAATTTTTTAATAACAAA487AGATTCAAGGGACAAATGGATAAGGACAATCTAGAGCTTTCTCTTATGAC
Zeuzera pyrina genome assembly, chromosome: 18.
OU015635.1:13611123-13611142
AAAGTGGAATTGGACAGGACATGTAATGAG13611123AGATTCAAGGGACAAATGGACGAGGAAAATTACGGAATGGTATCCAAGGA
Catocala nupta genome assembly, chromosome: 7.
OY776085.1:26049299-26049318
CTCCTAGAATCTGATACATACATGTGTATC26049299AGATTCAAGGGACAAATGGAGGTGTAGTAAACCCACATATGGCTAGCTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCATTTGTCCCTTGAATCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCATTTGTCCCTTGAATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=TCCATTTGTCCCTTGAATCT&k=0&no_gap=0&offset=0&limit=50
0.203 | 0.094 | search_minus_done; http://172.18.8.135:50400/match?q=AGATTCAAGGGACAAATGGA&k=0&no_gap=0&offset=0&limit=46
0.209 | 0.006 | cgi_end;

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