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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:26:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Oryzias latipes strain HSOK chromosome 3.
CP020623.1:37537704-37537725
GCTGAAATTATTACATATCTAATTTTCTTT37537704TCCATTTTCCATTTTCAACCTTTACCAACTATTTTGACTGCATCTGCATATG
EST622070 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIN23 3' end, mRNA sequence.
BQ514655.1:405-426
TTTCATGAGTGAAAGCTCAGAGCTAAGGAC405TCCATTTTCCATTTTCAACCTTTTATTCTCATCGACAAGATTTATATATTCA
33211.3 In vitro Root Solanum tuberosum cDNA clone 33211 3', mRNA sequence.
DN906154.1:419-440
TTTCATGAGTGAAAGCTCAGAGCTAAGGAC419TCCATTTTCCATTTTCAACCTTTTATTCTCATCGACAAGATTTATATATTCA
Solanum lycopersicum Micro-Tom DNA, chromosome 4, draft genome sequence.
AP028938.1:7239522-7239543
TTTCATGAGTAAAAGCTCAGAGCTAAGGAC7239522TCCATTTTCCATTTTCAACCTTTTATTTTCGTCGACAAGATTTATATACTCA
Solanum lycopersicum cultivar I-3 chromosome 4.
CP023760.1:6596819-6596840
TTTCATGAGTAAAAGCTCAGAGCTAAGGAC6596819TCCATTTTCCATTTTCAACCTTTTATTTTCGTCGACAAGATTTATATACTCA
Solanum tuberosum cultivar P8 chromosome 4.
CP046685.1:10409427-10409448
TTTCATGAGTGAAASCTCAGAGCTAAGGAC10409427TCCATTTTCCATTTTCAACCTTTTATTCTCATCGACAAGATTTRTATATTCA
Solanum tuberosum cultivar MSH/14-112 chromosome 4.
CP046699.1:10409619-10409640
TTTCATGAGTGAAASCTCAGAGCTAAGGAC10409619TCCATTTTCCATTTTCAACCTTTTATTCTCATCGACAAGATTTRTATATTCA
Solanum pinnatisectum cultivar CGN17745 chromosome 4.
CP047561.1:10407265-10407286
TTTCATGAGTGAAACCTCAGAGCTAAGGAC10407265TCCATTTTCCATTTTCAACCTTTTATTCTCATCGACAAGATTTGTATATTCA
Solanum tuberosum cultivar Solyntus chromosome 4.
CP055237.1:11937620-11937641
TTTCATGAGTGAAAGCTCAGAGCTAAGGAC11937620TCCATTTTCCATTTTCAACCTTTTATTCTCATCAACAAGATTTATATATTCA
Solanum verrucosum cultivar 11H23 chromosome 4.
CP133615.1:11271545-11271566
TTTCATGAGTGAAAGCTCAGAGCTAAGGAC11271545TCCATTTTCCATTTTCAACCTTTTATTCTCATCGACAAGATTTATATATTCA
Solanum pennellii chromosome ch04, complete genome.
HG975443.1:6683775-6683796
TTTCATGAGTAAAAGCTCAGAGCTAAGGAC6683775TCCATTTTCCATTTTCAACCTTTTATTTTCGTCGACAAGATTTATATACTCA
Solanum lycopersicum chromosome ch04, complete genome.
HG975516.1:6596850-6596871
TTTCATGAGTAAAAGCTCAGAGCTAAGGAC6596850TCCATTTTCCATTTTCAACCTTTTATTTTCGTCGACAAGATTTATATACTCA
Solanum lycopersicum genome assembly, chromosome: 4.
OU640347.1:7259450-7259471
TTTCATGAGTAAAAGCTCAGAGCTAAGGAC7259450TCCATTTTCCATTTTCAACCTTTTATTTTCGTCGACAAGATTTATATACTCA
Rhagonycha fulva genome assembly, chromosome: 3.
HG996556.1:24196486-24196507
GACCCAATATTTGATTTGTTGATACCACTA24196486TCCATTTTCCATTTTCAACCTTTTGAATTTTGAGGTTGTTTAATTTGATAAT
KR 1020130015711-A/1: A transcription factor gene, CaHSTF1 related to plant defense response and transgenic plants using the same gene.
DI249426.1:1150-1171
ACAATATATAAATCTTGTTGATGAAAATAA1150AAGGTTGAAAATGGAAAATGGAGTTCTTAATTCTGAGCTTTCACTTATGAAA
Sequence 7638 from patent US 7960612.
GY265685.1:264-285
TGAGTATATAAATCTTGTCGACGAAAATAA264AAGGTTGAAAATGGAAAATGGAGTCCTTAGCTCTGAGCTTTTACTCATGAAA
Sequence 10783 from patent US 8030546.
GY463008.1:264-285
TGAGTATATAAATCTTGTCGACGAAAATAA264AAGGTTGAAAATGGAAAATGGAGTCCTTAGCTCTGAGCTTTTACTCATGAAA
Sequence 10783 from patent US 10597667.
MO974161.1:264-285
TGAGTATATAAATCTTGTCGACGAAAATAA264AAGGTTGAAAATGGAAAATGGAGTCCTTAGCTCTGAGCTTTTACTCATGAAA
EST527978 cTOS Solanum lycopersicum cDNA clone cTOS21D12 5' end, mRNA sequence.
BI209938.1:264-285
TGAGTATATAAATCTTGTCGACGAAAATAA264AAGGTTGAAAATGGAAAATGGAGTCCTTAGCTCTGAGCTTTTACTCATGAAA
PI002F10 infected tomato, outside of lesion 3 dpi Phytophthora infestans cDNA, mRNA sequence.
CV968777.1:93-114
TGAGTATATAAATCTTGTCGACGAAAATAA93AAGGTTGAAAATGGAAAATGGAGTCCTTAGCTCTGAGCTTTTACTCATGAAA
KS23001B12 KS23 Capsicum annuum cDNA, mRNA sequence.
GD111046.1:621-642
ACAATATATAAATCTTGTTGATGAAAATAA621AAGGTTGAAAATGGAAAATGGAGTTCTTAATTCTGAGCTTTCACTTATGAAA
TSA: Capsicum annuum MGMT_Contig41271 mRNA sequence.
JW091515.1:1210-1231
ACAATATATAAATCTTGTTGATGAAAATAA1210AAGGTTGAAAATGGAAAATGGAGTTCTTAATTCTGAGCTTTCACTTATGAAA
405872 Tomato HindIII BAC Library Solanum lycopersicum genomic clone LE_HBa0215H21 3, genomic survey sequence.
DU895892.1:349-370
TGAGTATATAAATCTTGTCGACCAAAATAA349AAGGTTGAAAATGGAAAATGGAGTCCTTAGCTCTGAGCTTTTACTCATGAAA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:3706525-3706546
ACAATATATAAATCTTGTTGATGAAAATAA3706525AAGGTTGAAAATGGAAAATGGAGTTCTTAATTCTGAGCTTTCACTTATGAAA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 12.
CP124708.1:1326192-1326213
TGAATATATAAATCTTGTCGACGAAAATAA1326192AAGGTTGAAAATGGAAAATGGAGTTCTTAGCTCTGAGCTTTCACTCATGAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:4298043-4298064
ACAATATATAAATCTTGTTGATGAAAATAA4298043AAGGTTGAAAATGGAAAATGGAGTTCTTAATTCTGAGCTTTCACTTATGAAA
Calliphora vomitoria genome assembly, chromosome: 1.
OW818029.2:173321676-173321697
TTGATTTTCCTGTTTTTCCTATTCAAACTC173321676AAGGTTGAAAATGGAAAATGGAACGGAATGAAAAACGTATATATACAGTGGT
Chrysolina oricalcia genome assembly, chromosome: 3.
OX101811.2:17813997-17814018
TAATGGATTTTTTGACGTTATGCAAAAAAA17813997AAGGTTGAAAATGGAAAATGGAATATTACATGATGATCGTTCTTGATTTATG
Acronicta leporina genome assembly, chromosome: 4.
OX366515.1:1071842-1071863
ACATGATAAGACCTTCGTAACCACACCACA1071842AAGGTTGAAAATGGAAAATGGAAATGTTCATTATTATTAGATTATGACTCGA
Crioceris asparagi genome assembly, chromosome: 1.
OY293826.1:120831507-120831528
CAAGTCTGGAAAACAGCCAGTTGTTAAGGA120831507AAGGTTGAAAATGGAAAATGGAGGTCGAGCTAAATTGAAGCAACAAATACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCATTTTCCATTTTCAACCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCATTTTCCATTTTCAACCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.237 | 0.228 | search_plus_done; http://172.18.8.135:50400/match?q=TCCATTTTCCATTTTCAACCTT&k=0&no_gap=0&offset=0&limit=50
0.596 | 0.358 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGTTGAAAATGGAAAATGGA&k=0&no_gap=0&offset=0&limit=36
0.606 | 0.011 | cgi_end;

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