GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:44:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

SCJLLR1101D12.g LR1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCJLLR1101D12 5', mRNA sequence.
CA122669.1:155-174
CAAGGTGGTGGTGGCCGACTACGGCTTCAT155TCCCGTCTTCATCCTCATCGGTATGAACTCCGAGCCCATGCTGCGCTTCG
Chlamydomonas reinhardtii strain CC-5816 chromosome 1.
CP097811.1:2065119-2065138
CCGTGTCCGCCGCGCCCCCGCCTGCACTGC2065119TCCCGTCTTCATCCTCATCGTCCTCTGCGTCGCTACCCGCTTTTTGGGAG
[Candida] intermedia strain PYCC 4715 genome assembly, chromosome: I.
LT635764.1:3193704-3193723
TCGACTTATCGATTTTTTCAACATTGCTTT3193704TCCCGTCTTCATCCTCATCGTCATTACTCATTTCCTCATCAGAATCTTCC
Pseudognaphalium luteoalbum genome assembly, chromosome: 5.
OY730196.1:119435712-119435731
ACTCCTTGCTTTTCTTAATTTTACTCGTTT119435712TCCCGTCTTCATCCTCATCGTATTCGTCTTCTTCGTCATCTTCTTCCTCC
Sequence 6 from patent US 10619170.
MV087795.1:2177749-2177768
TTGTGGGGGCAATGACGGTGATGATAGCGA2177749CGATGAGGATGAAGACGGGACTTCTGTTTCATTCAAGTTCTTTAGGAAGC
Sequence 6 from patent US 11118193.
MY531425.1:2177749-2177768
TTGTGGGGGCAATGACGGTGATGATAGCGA2177749CGATGAGGATGAAGACGGGACTTCTGTTTCATTCAAGTTCTTTAGGAAGC
Kluyveromyces lactis strain GG799 chromosome B, complete sequence.
CP021240.1:1112449-1112468
TTGTGGGGGCAATGACGGTGATGATAGCGA1112449CGATGAGGATGAAGACGGGACTTCTGTTTCATTCAAGTTCTTTAGGAAGC
Kluyveromyces lactis strain NRRL Y-1140 chromosome B complete sequence.
CR382122.1:1115169-1115188
TTGTGGGGGCAATGACGGTGATGATAGCGA1115169CGATGAGGATGAAGACGGGACTTCTGTTTCATTCAAGTTCTTTAGGAAGC
Manihot esculenta sucrose transporter type 1 (SUT1) mRNA, partial cds.
DQ138374.1:504-523
TGCGGAACAGGGAAACACCACTGCCGGTGA504CGATGAGGATGAAGACGGGAAGTCGGAGTCTTCTCCGATGCCGTTCTTCG
Manihot esculenta sucrose transporter (SUT1a) mRNA, complete cds.
KT876449.1:836-855
TGCGGAACAGGGAAACACCACTGCCGGTGA836CGATGAGGATGAAGACGGGAAGTCGGAGTCTTCTCCGATGCCGTTCTTCG
Aphrocallistes beatrix genome assembly, chromosome: 6.
OY725493.1:1254093-1254112
GCTCGCGGGTGAGATCAGGGAGCTGCTCAG1254093CGATGAGGATGAAGACGGGAATGAAGAGAGTAGAGCGAAGATGGAACAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCCGTCTTCATCCTCATCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCCGTCTTCATCCTCATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.129 | 0.120 | search_plus_done; http://172.18.8.135:50400/match?q=TCCCGTCTTCATCCTCATCG&k=0&no_gap=0&offset=0&limit=50
0.262 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=CGATGAGGATGAAGACGGGA&k=0&no_gap=0&offset=0&limit=46
0.267 | 0.005 | cgi_end;

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