GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 13:37:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

rcrycc0_0045_E04.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO109953.1:353-372
ACCTTGCGGCTCGCAATGTCCTTGGCAATC353TCCCTAGCTCTCCACTCATCAGCTTCTCGGTCAGCTTGATCAAATTGTTC
A04_420301.7.S1104072579.anther-SP4996 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK694885.1:619-638
ACCTTGCGGCTCGCAATGTCCCTGGCAATC619TCCCTAGCTCTCCACTCATCAGCTTCTCAGTCAGCTTGATCAAATTGTTC
H06_51749.90.S1108273433.LDYN1-12282.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ119170.1:619-638
ACCTTGCGGCTCGCAATGTCCTTGGCAATC619TCCCTAGCTCTCCACTCATCAGCTTCTCAGTCAGCTTGATCAAATTGTTC
Gossypium herbaceum isolate Zhongcao1 chromosome 7.
CP106693.1:30821092-30821111
ACCTTCCGGCTGGCAATGTCCTTGGCAATC30821092TCCCTAGCTCTCCACTCATCAGCTTCTCGGTCAGCTTGATCAAATTGTTC
Gossypium bickii isolate GPG1lz chromosome 7.
CP106719.1:39581555-39581574
ACCTTGCGGCTCGCAATGTCCTTGGCAATC39581555TCCCTAGCTCTCCACTCATCAGCTTCTCGGTCAGCTTGATCAAATTGTTC
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:18205360-18205379
ACCTTGCGTTTGGCAATATCTTTGGCAATT18205360TCCCTAGCTCTCCACTCATCAGCTTCTCGATCAGCTTCCTCGAACCTCTC
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:18092445-18092464
ACCTTGCGTTTGGCAATATCTTTGGCAATT18092445TCCCTAGCTCTCCACTCATCAGCTTCTCGATCAGCTTCCTCGAACCTCTC
Theobroma grandiflorum isolate C1074 chromosome 1.
CP142130.1:4002763-4002782
ACCTTGCGGCTTGCAATGTCCTTGGCAATC4002763TCCCTAGCTCTCCACTCATCAGCTTCTCTATCAGCTTGGTCAAATCGCTC
Malus domestica genome assembly, chromosome: 7.
OU744548.1:19017361-19017380
ACCTTGCGTTTGGCAATATCTTTGGCAATT19017361TCCCTAGCTCTCCACTCATCAGCTTCTCGATCAGCTTCCTCGAACCTCTC
Potentilla anserina genome assembly, chromosome: 7.
OW176987.1:15073901-15073920
ACCTTGCGTTTGGCTATATCCTTAGCAATT15073901TCCCTAGCTCTCCACTCATCAGCTTCTCGATCAGCTTCATCAAACTTTTC
Theobroma cacao genome assembly, chromosome: 1.
OY284458.1:3371009-3371028
ACCTTGCGGCTTGCAATGTCCTTGGCAATC3371009TCCCTAGCTCTCCACTCATCAGCTTCTCTATCAGCTTGGTCAAATCGCTC
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:16679630-16679649
ACCTTGCGTTTGGCAATATCTTTGGCAATT16679630TCCCTAGCTCTCCACTCATCAGCTTCTCGATCAGCTTCCTCGAACTTCTC
Potentilla sterilis genome assembly, chromosome: 13.
OY821766.1:38028585-38028604
ACCTTGCGTTTGGCAATATCCTTTGCAATC38028585TCCCTAGCTCTCCACTCATCAGCTTTTCGATCAGCTTCATCAAACCCTTC
EST1064169 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT553529.1:727-746
GAACAATTTGATCAAGCTGACCGAGAAGCT727GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCGAGCCGCAAGGT
EST1072792 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT562152.1:630-649
GAACAATTTGATCAAGCTGACCGAGAAGCT630GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCCAGCCGGAAGGT
EST1078213 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT567573.1:668-687
GAACAATTTGATCAAGCTGACCGAGAAGCT668GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCGAGCCGCAAGTT
EST1078268 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT567628.1:683-702
GAACAATTTGATCAAGCTGACCGAGAAGCT683GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCGAGCCGCAAGGT
EST1079537 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT568897.1:611-630
GAACAATTTGATCAAGCTGACCGAGAAGCT611GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCGAGCCGCAAGGT
UFL_540_26 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES800880.1:518-537
GAACAATTTGATCAAGCTGACTGAGAAGCT518GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCGAGCCGCAAGGT
UFL_645_19 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES805349.1:654-673
GAACAATTTGATCAAGCTGACCGAGAAGCT654GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCCAGCCGGAAGGT
Mdwdr7510A20.g1 Apple_EST_Mdwdr Malus domestica cDNA 5' similar to ref|NP_850448.1| expressed protein [Arabidopsis thaliana] gb|AAL59984.1| unknown protein [Arabidopsis thaliana] gb|AAM20058.1| unknow
GO528670.1:45-64
GTCGGGTTCGAGGAAGCTGATCGAGAAGCT45GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGAT
TSA: Pyrus pyrifolia mRNA, contig: contig_28888.
FX403837.1:629-648
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT629GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGAT
TSA: Pyrus x bretschneideri Unigene23318_XinShao mRNA sequence.
JR617247.1:683-702
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT683GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGAT
GH_TBb115D01r Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO224215.1:257-276
GAACAATTTGATCAAGCTGACCGAGAAGCT257GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCCAGCCGGAAGGT
Gossypium turneri isolate D10-2 chromosome D10_07.
CP032577.1:31529515-31529534
GAACAATTTGATCAAGCTGACCGAGAAGCT31529515GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCGAGCCGCAAGGT
Gossypium herbaceum isolate GPA1alz chromosome 7.
CP106706.1:68708405-68708424
GAACAATTTGATCAAGCTGACCGAGAAGCT68708405GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCCAGCCGGAAGGT
Theobroma cacao isolate Sca6 chromosome 1.
CP139290.1:38813539-38813558
GAGCGATTTGACCAAGCTGATAGAGAAGCT38813539GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCAAGCCGCAAGGT
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:18787195-18787214
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT18787195GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:18163097-18163116
GAAAGGTTCGAGGAAGCTGATCGAGAAGCT18163097GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:17931042-17931061
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT17931042GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:18049180-18049199
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT18049180GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Theobroma cacao genome assembly, chromosome: I.
LT594788.1:34124588-34124607
GAGCGATTTGACCAAGCTGATAGAGAAGCT34124588GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCAAGCCGCAAGGT
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:18368596-18368615
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT18368596GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Malus domestica genome assembly, chromosome: 7.
OU696683.1:17709133-17709152
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT17709133GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Malus domestica genome assembly, chromosome: 7.
OU744959.1:17554515-17554534
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT17554515GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Malus domestica genome assembly, chromosome: 7.
OU744997.1:17959210-17959229
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT17959210GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Potentilla anserina genome assembly, chromosome: 3.
OW176983.1:382950-382969
GAAATGTTTGATGAAGCTGATCGAGAAGCT382950GATGAGTGGAGAGCTAGGGAAATTGCTAAGGATATAGCCAAACGCAAGGC
Theobroma cacao genome assembly, chromosome: 1.
OY284438.1:36244895-36244914
GAGCGATTTGACCAAGCTGATAGAGAAGCT36244895GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCAAGCCGCAAGGT
Theobroma cacao genome assembly, chromosome: 1.
OY284448.1:36088991-36089010
GAGCGATTTGACCAAGCTGATAGAGAAGCT36088991GATGAGTGGAGAGCTAGGGAGATTGCCAAGGACATTGCAAGCCGCAAGGT
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:16383712-16383731
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT16383712GATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGGT
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:10850139-10850158
GAGAGGTTCGAGGAAGCTGATCGAGAAGCT10850139GATGAGTGGAGAGCTAGGGACATTGCAAAAGATATTGCCAAGCGCAAGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCCTAGCTCTCCACTCATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCCTAGCTCTCCACTCATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.747 | 0.738 | search_plus_done; http://172.18.8.135:50400/match?q=TCCCTAGCTCTCCACTCATC&k=0&no_gap=0&offset=0&limit=50
1.477 | 0.730 | search_minus_done; http://172.18.8.135:50400/match?q=GATGAGTGGAGAGCTAGGGA&k=0&no_gap=0&offset=0&limit=37
1.496 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).