GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 13:44:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Arachis hypogaea DNA, clone: 8iHA00A22, cultivar: YI-0311.
DE998450.1:313-332
TTTTAAATTTTAAAAGTCAACTCACGTTAG313TCCCTCCATTCATCTTCGTTAATAGAGTGCTTAACTGAAATTTTAAAAGT
Arachis hypogaea cultivar Shitouqi chromosome B05.
CP030997.1:9388952-9388971
TTTTAAATTTTAGAAGTCAACTCACGTTAG9388952TCCCTCCATTCATCTTCGTTAATAGAGTGCTTAACTGAAATTTTAAAAGT
Arachis ipaensis cultivar K30076 chromosome 05.
CP049896.1:15611744-15611763
TTTTAAATTTTAGAAGTCAACTCACGTTAG15611744TCCCTCCATTCATCTTCGTTAATAGAGTGCTTAACTGAAATTTTAAAAGT
Paspalum notatum var. saurae isolate R1 chromosome 04.
CP144748.1:5739968-5739987
CCAACACCCACAAAGCACACACAACGATAC5739968TCCCTCCATTCATCTTCGTTAAGTGTATTTATCTTGAAAAATATTCACAA
Triticum timopheevii genome assembly, chromosome: 6G.
OY997272.1:409476375-409476394
CAGCAGCACGGCGGCGACCACAAAAGTTGA409476375TCCCTCCATTCATCTTCGTTTTTCAGTTAGTTGACTGGTGAGGGGTTTTG
Cordylochernes scorpioides isolate IN4F17 chromosome 09.
CP092871.1:7663244-7663263
TGACATAAGGAAGTGGAAGTCTTTAATGTC7663244TCCCTCCATTCATCTTCGTTTTCTTTTTTGAAGGAGACAGAGGTTGTTCA
Myripristis murdjan genome assembly, chromosome: 9.
LR597558.1:17123967-17123986
AAGAGATGTAAAGAGACTGCAGAAAAGGGG17123967AACGAAGATGAATGGAGGGAATATGAGAAGTAAAAAAAAAAATGGGAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCCTCCATTCATCTTCGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCCTCCATTCATCTTCGTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.130 | 0.122 | search_plus_done; http://172.18.8.135:50400/match?q=TCCCTCCATTCATCTTCGTT&k=0&no_gap=0&offset=0&limit=50
0.165 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=AACGAAGATGAATGGAGGGA&k=0&no_gap=0&offset=0&limit=44
0.165 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).