GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 16:10:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH036_08138m, 5' end sequence.
AB450716.1:27-49
CTTCCTTCCCCTATTAATTCCTCTCT27TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTGAATCCAT
020806AVBC012449HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012449, mRNA sequence.
CN948450.1:12-34
AATTCCTCTCT12TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:3126368-3126390
CCTCCTTCCTTCCCCTATTAATTCCCCTCT3126368TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:3487896-3487918
CCTCCTTCCTTCCCCTATTAATTCCTCTCT3487896TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:3272054-3272076
TCCTTCCCCTTCCCCTATTAATTCCTCTCT3272054TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:3792016-3792038
TCCTTCCCCTTCCCCTATTAATTCCTCTCT3792016TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:3514244-3514266
TCCTCCTTCCTCCCCTATTAATTCCTCTCT3514244TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:3116011-3116033
CCTCCTTCCTTCCCCTATTAATTCCTCTCT3116011TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:3313378-3313400
CCTCCTTCCTTCCCCTATTAATTCCTCTCT3313378TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:3533536-3533558
TCCTCCTTCCTCCCCTATTAATTCCTCTCT3533536TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus domestica genome assembly, chromosome: 16.
OU744557.1:3536533-3536555
TCCTCCTTCCTCCCCTATTAATTCCTCTCT3536533TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus domestica genome assembly, chromosome: 16.
OU744968.1:3501328-3501350
TCCTCCTTCCTCCCCTATTAATTCCTCTCT3501328TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus domestica genome assembly, chromosome: 16.
OU745006.1:3538233-3538255
TCCTCCTTCCTCCCCTATTAATTCCTCTCT3538233TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:3904920-3904942
TCCTCCTTCCTCCCCTATTAATTCCTCTCT3904920TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTTCATCCAT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:2884732-2884754
CCTCCTTCCTTCCCCTATTAATTCCTCTCT2884732TCCCTGCCAAACATTTTCTCTACTCTGAGTCCTCTCCATTTACCTGCATCCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCCTGCCAAACATTTTCTCTAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCCTGCCAAACATTTTCTCTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.158 | 0.149 | search_plus_done; http://172.18.8.135:50400/match?q=TCCCTGCCAAACATTTTCTCTAC&k=0&no_gap=0&offset=0&limit=50
0.193 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGAGAAAATGTTTGGCAGGGA&k=0&no_gap=0&offset=0&limit=35
0.193 | 0.000 | cgi_end;

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