GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 06:39:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Medicago truncatula chromosome 7 clone mth2-19e15, complete sequence.
AC149131.3:105101-105122
TCAACATACCAGTGTTTTCAAGTACATACA105101TCCGACTGTTATTGTTAGGCCAAAACCTGCATTATTCAATATAACCTTATTA
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:18049519-18049540
TTAACATACCGGTGTTTTCAAGTACATACA18049519TCCGACTGTTATTGTTAGGCCAAAACCTGCATTATTCAAATAGAAATGTAAT
Trifolium repens isolate ACLI19 chromosome 07_Pall.
CP125849.1:18911986-18912007
TTAACATACCGGTGTTTTCAAGTACATACA18911986TCCGACTGTTATTGTTAGGCCAAAACCTGCATTATTCAAATAGAAATGAAAT
Glycine max cultivar Williams 82 chromosome 16.
CP126441.1:4799696-4799717
GTTAGTTACCAGTATTTTCAAGTACATACA4799696TCCGACTGTTATTGTTAGGCCAAAACCTGCATTATTCAAATAGAAACACAAT
Trifolium subterraneum genome assembly, chromosome: 8.
OX637468.1:18605626-18605647
TTAACATACCGGTATTTTCAAGTACGTACA18605626TCCGACTGTTATTGTTAGGCCAAAACCTGCATTATTCAAATTGAAATGTAAT
Trifolium fragiferum genome assembly, chromosome: 5.
OX940793.1:31736948-31736969
TTAACATACCGGTGTTTTCGAGTACATACA31736948TCCGACTGTTATTGTTAGGCCAAAACCTGCATTATTCAAATAGAAATGTAAT
Medicago lupulina genome assembly, chromosome: 2.
OY283140.1:12135928-12135949
TCAACATACCAGTGTTTTCAAGTACATACA12135928TCCGACTGTTATTGTTAGGCCAAAATCTGCAGTATTGAAATAGAAATATCAC
Medicago lupulina genome assembly, chromosome: 2.
OY283140.1:16341776-16341797
TCAACATACCAGTGTTTTCAAGCACATACA16341776TCCGACTGTTATTGTTAGGCCAAAACCTGCAGTATTGAAATAGAAATATAAC
Sequence 31 from Patent WO2013096562.
JB750636.1:724-745
CTTCATGTATGGAGTTTCAAGTACAGGTTT724TGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTG
Sequence 102 from Patent WO2015017510.
JD589805.1:724-745
CTTCATGTATGGAGTTTCAAGTACAGGTTT724TGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTG
Sequence 31 from patent US 10036030.
MI927061.1:724-745
CTTCATGTATGGAGTTTCAAGTACAGGTTT724TGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTG
Sequence 31 from patent US 10876128.
MX173733.1:724-745
CTTCATGTATGGAGTTTCAAGTACAGGTTT724TGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTG
Sequence 31 from patent US 11319549.
OO148809.1:724-745
CTTCATGTATGGAGTTTCAAGTACAGGTTT724TGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTG
Gm-r1030-1140 Gm-r1030 Glycine max cDNA, mRNA sequence.
CN472223.1:338-359
CTTCATGTATGGAGTTTCAAGTACAGGTTT338TGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTG
Medicago arabica genome assembly, chromosome: 6.
OX326969.1:43464861-43464882
ATTATATTTCTATTTCAATACTGCAGGTTT43464861TGGCCTAACAATAACAGTCGGATGTATGTACTTGAGAACACTGGTATGTTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCGACTGTTATTGTTAGGCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCGACTGTTATTGTTAGGCCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.096 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=TCCGACTGTTATTGTTAGGCCA&k=0&no_gap=0&offset=0&limit=50
0.402 | 0.306 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCCTAACAATAACAGTCGGA&k=0&no_gap=0&offset=0&limit=42
0.406 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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