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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:41:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_11302.
FX660205.1:1527-1546
TCGAGCAATGTAGGATTGGTTCTCGTGTGT1527TCCGAGAAGCCTCATTTGTCCGTCCTCGTCAACGGTTTCAAGTGCTTCGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18387.
FX729799.1:1176-1195
TCGAGCGATGTAGGATTGGTTCTCGTGTGT1176TCCGAGAAGCCTCATTTGTCCGTCTTCATTAACGGTGTCAAGTGCTTCAT
TSA: Raphanus sativus RS26896 mRNA sequence.
JT811443.1:1521-1540
TCGAGCAATGTAGGATTGGTTCTCGTGTGT1521TCCGAGAAGCCTCATTTGTCCGTCCTCGTCAACGGTTTCAAGTGCTTCGT
KBrB011L09F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB011L09, genomic survey sequence.
DX018798.1:99-118
TCGAGCAATGTAAGATTGGTTCTCGTGTGT99TCCGAGAAGCCTCATTTGTCCGTCCCCATCAACGGTTTCAAGTGTTTCAT
KBrB027O19R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB027O19, genomic survey sequence.
DX031184.1:100-119
TCGAGCAATGTAAGATTGGTTCTCGTGTGT100TCCGAGAAGCCTCATTTGTCCGTCCCCATCAACGGTTTCAAGTGTTTCAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011L09, complete sequence.
AC189224.1:101-120
TCGAGCAATGTAAGATTGGTTCTCGTGTGT101TCCGAGAAGCCTCATTTGTCCGTCCCCATCAACGGTTTCAAGTGTTTCAT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:10479769-10479788
TCGAGCAATGTAAGATTGGTTCTCGTGTGT10479769TCCGAGAAGCCTCATTTGTCCGTCCCCATCGACAGTTTCAAGTGTTTCAT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:9243975-9243994
TCGAGCAATGTAAGATTGGTTCTCGTGTGT9243975TCCGAGAAGCCTCATTTGTCCGTCCCCATCGACAGTTTCAAGTGTTTCAT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:11707226-11707245
TCGAGCAATGTAAGATTGGTTCTCGTGTGT11707226TCCGAGAAGCCTCATTTGTCCGTCCTCATCGACAGTTTCAAGTGTTTCAT
Brassica rapa genome, scaffold: A06.
LR031569.1:9039263-9039282
TCGAGCAATGTAAGATTGGTTCTCGTGTGT9039263TCCGAGAAGCCTCATTTGTCCGTCCCCATCAACGGTTTCAAGTGTTTCAT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:11412481-11412500
TCGAGCAATGTAAGATTGGTTCTCGTGTGT11412481TCCGAGAAGCCTCATTTGTCCGTCCTCATCGACAGTTTCAAGTGTTTCAT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:9875992-9876011
TCGAGCAATGTAAGATTGGTTCTCGTGTGT9875992TCCGAGAAGCCTCATTTGTCCGTCCCCATCAACGGTTTCAAGTGTTTCAT
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:3804546-3804565
TCGAGCGATGTAGGATTGGTTCTCGTGTGT3804546TCCGAGAAGCCTCATTTGTCCGTCTTCATTAACGGTGTCAAGTGCTTCAT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a015C15_SP6.
AM060405.1:167-186
ATGAAACACTTGAAACTGTCGATGAGGACG167GACAAATGAGGCTTCTCGGAACACACGAGAACCAATCTTACATTGCTCGA
48RDOAM_UP_028_F11_13AUG2004_085 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
DY015742.1:83-102
ATGAAACACTTGAAACTGTCGATGAGGACG83GACAAATGAGGCTTCTCGGAACACACGAGAACCAATCTTACATTGCTCGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2162.
FX693461.1:1063-1082
ATGAAACACTTGAAACCGTTGATGGGGACG1063GACAAATGAGGCTTCTCGGAACACACGAGAACCAATCTTACATTGCTCGA
Raphanus sativus cultivar WK10039 clone RsH001K16, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC255296.1:29269-29288
ACGAAGCACTTGAAACCGTTGACGAGGACG29269GACAAATGAGGCTTCTCGGAACACACGAGAACCAATCCTACATTGCTCGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.
AC189247.2:8215-8234
ATGAAACACTTGAAACCGTTGATGGGGACG8215GACAAATGAGGCTTCTCGGAACACACGAGAACCAATCTTACATTGCTCGA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:47494845-47494864
ATGAAACACTTGAAACTGTCGATGAGGACG47494845GACAAATGAGGCTTCTCGGAACACACGAGAACCAATCTTACATTGCTCGA
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:25089736-25089755
ATGAAGCACTTGACACCGTTAATGAAGACG25089736GACAAATGAGGCTTCTCGGAACACACGAGAACCAATCCTACATCGCTCGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCGAGAAGCCTCATTTGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCGAGAAGCCTCATTTGTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.281 | 0.272 | search_plus_done; http://172.18.8.135:50400/match?q=TCCGAGAAGCCTCATTTGTC&k=0&no_gap=0&offset=0&limit=50
0.422 | 0.142 | search_minus_done; http://172.18.8.135:50400/match?q=GACAAATGAGGCTTCTCGGA&k=0&no_gap=0&offset=0&limit=37
0.427 | 0.005 | cgi_end;

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